Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_H06
         (459 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0382 + 24547680-24548760,24548887-24549033,24549389-24550023     29   2.4  
11_01_0485 + 3728686-3728863,3729933-3730095,3730508-3730549,373...    28   3.1  

>05_05_0382 + 24547680-24548760,24548887-24549033,24549389-24550023
          Length = 620

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 14/30 (46%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
 Frame = +1

Query: 346 KSCT*DGIHRESN--GECR*KLKENATNIC 429
           + C  DG H E    GEC  K KEN T+ C
Sbjct: 15  EDCAIDGSHDEKTCTGECTRKKKENRTSCC 44


>11_01_0485 +
           3728686-3728863,3729933-3730095,3730508-3730549,
           3730833-3730927,3731273-3731334,3731416-3731507,
           3731587-3731722,3731818-3731904,3732430-3732519,
           3732969-3733071,3733616-3733716,3733837-3733971,
           3734006-3734093,3734484-3734544,3734626-3734689,
           3735219-3735347
          Length = 541

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = -2

Query: 452 VHTGNQYEQILVAFSLSFHLH-SPFDSLWMPSHV 354
           VH GNQYE+ + +F++  + H +PF    + SH+
Sbjct: 396 VHGGNQYEKDVGSFNMILYYHIAPFIPQIVVSHI 429


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,297,012
Number of Sequences: 37544
Number of extensions: 170988
Number of successful extensions: 267
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 265
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 267
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 907440304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)