Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_H06
         (459 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80445-6|AAB37797.2|  575|Caenorhabditis elegans Hypothetical pr...    29   2.1  
Z47073-4|CAM33507.1|  954|Caenorhabditis elegans Hypothetical pr...    27   8.7  
Z47073-3|CAA87374.1|  999|Caenorhabditis elegans Hypothetical pr...    27   8.7  
AF003138-1|AAK21371.3|  469|Caenorhabditis elegans Hypothetical ...    27   8.7  

>U80445-6|AAB37797.2|  575|Caenorhabditis elegans Hypothetical
           protein C50F2.1 protein.
          Length = 575

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 17/44 (38%), Positives = 23/44 (52%)
 Frame = -3

Query: 292 KRLQRLLAFCCIKTHYYCMSTNLETPNNHFMLALITSLDFDPLC 161
           K+L RL+    +K   Y +   L   +N F L LITSL +  LC
Sbjct: 259 KQLLRLVKTSYVKATEYIIVKCLIELSNFFSLKLITSLIYSKLC 302


>Z47073-4|CAM33507.1|  954|Caenorhabditis elegans Hypothetical
           protein ZC506.4b protein.
          Length = 954

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 21/62 (33%), Positives = 30/62 (48%)
 Frame = -2

Query: 362 SHVQLL*GV*NYKH*LTIDYIYKEATTKAACILLHQNALLLHVYKSRNSKQSFHVSINHL 183
           S+V L+     Y   L  D   KEA  K  CI L +        + +N K+SF  SIN+L
Sbjct: 217 SYVSLVYSADEYGE-LGADAFKKEARKKGICIALEE--------RIQNKKESFTESINNL 267

Query: 182 IR 177
           ++
Sbjct: 268 VQ 269


>Z47073-3|CAA87374.1|  999|Caenorhabditis elegans Hypothetical
           protein ZC506.4a protein.
          Length = 999

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 21/62 (33%), Positives = 30/62 (48%)
 Frame = -2

Query: 362 SHVQLL*GV*NYKH*LTIDYIYKEATTKAACILLHQNALLLHVYKSRNSKQSFHVSINHL 183
           S+V L+     Y   L  D   KEA  K  CI L +        + +N K+SF  SIN+L
Sbjct: 262 SYVSLVYSADEYGE-LGADAFKKEARKKGICIALEE--------RIQNKKESFTESINNL 312

Query: 182 IR 177
           ++
Sbjct: 313 VQ 314


>AF003138-1|AAK21371.3|  469|Caenorhabditis elegans Hypothetical
           protein F12B6.3 protein.
          Length = 469

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +3

Query: 252 VLMQQNASSLCSRFFIDIVYCQLVF-VVSHSL*KLHVRW 365
           + +Q   S   +RF ID  YCQLVF   S++   + V W
Sbjct: 149 IRVQSPCSMDLARFPIDTQYCQLVFESYSYNTASVSVNW 187


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,607,492
Number of Sequences: 27780
Number of extensions: 177980
Number of successful extensions: 402
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 398
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 402
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 820565746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)