Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_H05
         (393 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0...    71   5e-14
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...    69   3e-13
SPAC3F10.05c |mug113||DUF1766 family protein|Schizosaccharomyces...    27   0.79 
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces...    27   1.0  
SPAC222.07c |hri2||eIF2 alpha kinase Hri2|Schizosaccharomyces po...    25   5.5  
SPAC20G8.08c |fft1||fun thirty related protein Fft1|Schizosaccha...    24   7.3  
SPBC11C11.02 |imp2||contractile ring protein Imp2|Schizosaccharo...    24   7.3  
SPBC2F12.02c |mrpl7||mitochondrial ribosomal protein subunit L7|...    24   7.3  
SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyc...    24   7.3  

>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 292

 Score = 71.3 bits (167), Expect = 5e-14
 Identities = 32/49 (65%), Positives = 38/49 (77%)
 Frame = +1

Query: 10  KSSHSIGLMWWLLAREVLRLRGVLSRDQRWDVVVDLFFYRDPVESVKEE 156
           K   SIGL+W+LLAREVLR+RG LSR   WDV+ DL+FYRDP E  +EE
Sbjct: 168 KGRKSIGLIWYLLAREVLRVRGTLSRSAPWDVMPDLYFYRDPEEVEREE 216


>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score = 68.5 bits (160), Expect = 3e-13
 Identities = 31/52 (59%), Positives = 39/52 (75%)
 Frame = +1

Query: 10  KSSHSIGLMWWLLAREVLRLRGVLSRDQRWDVVVDLFFYRDPVESVKEESKQ 165
           K   SIGL W+LLAREVLRLRG +SR   W+V+ DL+FYRDP E  +EE ++
Sbjct: 169 KGYKSIGLAWYLLAREVLRLRGNISRTTAWEVMPDLYFYRDPEEIEREEEQK 220


>SPAC3F10.05c |mug113||DUF1766 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 326

 Score = 27.5 bits (58), Expect = 0.79
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = +1

Query: 34  MWWLLAREVLRLRGVLSRDQRWDVVVDLFFYRDPVESVKEESKQ 165
           +WW L+R+  R    LSR  +W  V     Y    E+   E ++
Sbjct: 68  IWWSLSRKATRFYRWLSRSLKWRPVTYETVYPQTYETQMSEPRE 111


>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 27.1 bits (57), Expect = 1.0
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +1

Query: 25  IGLMWWLLAREVLRLRGVLSRDQRWD 102
           IGL W L  REV R + + +R++ WD
Sbjct: 365 IGLKWTLKLREVERKQLLTAREKWWD 390


>SPAC222.07c |hri2||eIF2 alpha kinase Hri2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 639

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -2

Query: 143 LSTGSR*KNKSTTTSQRWSRLRTPRSLNTSRAN 45
           +ST  +    STT S  +  L +PR+L+ S  +
Sbjct: 298 ISTSRKSSYSSTTESSNFENLESPRNLHDSNVS 330


>SPAC20G8.08c |fft1||fun thirty related protein
           Fft1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 944

 Score = 24.2 bits (50), Expect = 7.3
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -1

Query: 141 LYRVTIEEQVNDNIPTLVTTKNTTESQYFT 52
           +YR+  +  + +NI  L  TK T ES   T
Sbjct: 884 VYRLITKNTIEENIRRLANTKLTLESSLTT 913


>SPBC11C11.02 |imp2||contractile ring protein
           Imp2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 670

 Score = 24.2 bits (50), Expect = 7.3
 Identities = 16/31 (51%), Positives = 18/31 (58%)
 Frame = -2

Query: 155 SSFTLSTGSR*KNKSTTTSQRWSRLRTPRSL 63
           SSFTL      K  S++ SQ  SRL  PRSL
Sbjct: 502 SSFTLRKSRSPKRPSSSLSQNASRL--PRSL 530


>SPBC2F12.02c |mrpl7||mitochondrial ribosomal protein subunit
           L7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 287

 Score = 24.2 bits (50), Expect = 7.3
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +3

Query: 156 EQTMLRNRLSSLPKWKRRRQFMRNGLRMLNQLHHGL 263
           +Q + +NR   LP W    ++ R G  MLN+L   L
Sbjct: 23  KQKLGKNR--PLPGWDPNSEYFRPGPTMLNRLQEHL 56


>SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 969

 Score = 24.2 bits (50), Expect = 7.3
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +1

Query: 106 VVDLFFYRDPVESVKEESKQ 165
           V+DLF Y    ES KE  KQ
Sbjct: 285 VIDLFVYSGSTESPKETVKQ 304


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,379,304
Number of Sequences: 5004
Number of extensions: 24067
Number of successful extensions: 76
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 130061696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)