Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_H05
         (393 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609...    68   3e-12
03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431...    67   5e-12
01_07_0027 - 40578075-40578437,40578647-40578767,40578852-405789...    27   7.1  
01_02_0081 + 10943368-10943787                                         27   7.1  
05_07_0035 - 27221338-27221433,27221510-27221599,27222056-272221...    26   9.4  
02_05_0910 - 32684836-32685259,32685911-32685987,32686179-32686421     26   9.4  

>07_03_1272 -
           25360180-25360286,25360454-25360658,25360748-25360945,
           25361034-25361296,25361865-25362009
          Length = 305

 Score = 67.7 bits (158), Expect = 3e-12
 Identities = 28/55 (50%), Positives = 40/55 (72%)
 Frame = +1

Query: 1   ARGKSSHSIGLMWWLLAREVLRLRGVLSRDQRWDVVVDLFFYRDPVESVKEESKQ 165
           A  K   SIG ++WLLAR VL++RG +    +WDV+VDLFFYRDP E+ ++E ++
Sbjct: 167 ANNKGKQSIGCLFWLLARMVLQMRGTILPGHKWDVMVDLFFYRDPEEAKEQEEEE 221


>03_01_0582 -
           4318837-4318967,4319219-4319399,4319504-4319701,
           4319791-4320053,4320453-4320597
          Length = 305

 Score = 66.9 bits (156), Expect = 5e-12
 Identities = 28/54 (51%), Positives = 40/54 (74%)
 Frame = +1

Query: 1   ARGKSSHSIGLMWWLLAREVLRLRGVLSRDQRWDVVVDLFFYRDPVESVKEESK 162
           A  K  +SIG ++WLLAR VL++RG +    +WDV+VDLFFYRDP E+ ++E +
Sbjct: 167 ANNKGRNSIGCLFWLLARMVLQMRGTILPGHKWDVMVDLFFYRDPEEAKEQEEE 220


>01_07_0027 -
           40578075-40578437,40578647-40578767,40578852-40578952,
           40579176-40579451,40579485-40579805,40581609-40581623,
           40581969-40582295,40583287-40583538
          Length = 591

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -1

Query: 132 VTIEEQVNDNIPTLVTTKNTTESQYFTC*QPPH 34
           V  + Q   NIP LVT+ +TT+ + F    PPH
Sbjct: 462 VNNKPQAKPNIPRLVTSTSTTKLERF---PPPH 491


>01_02_0081 + 10943368-10943787
          Length = 139

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 15/40 (37%), Positives = 18/40 (45%), Gaps = 7/40 (17%)
 Frame = -3

Query: 310 GCTKCSRSSGC-RCCIFSP*C-----NWFNILNPF-LMNW 212
           GC  C R  GC  C  + P C     +W  I+ P  L NW
Sbjct: 82  GCDGCGRGGGCDGCGRYPPMCEDEPSSWVRIVAPLDLANW 121


>05_07_0035 -
           27221338-27221433,27221510-27221599,27222056-27222115,
           27222231-27222523,27222601-27222757,27222917-27223261,
           27223890-27224020,27224119-27224596,27224817-27225563
          Length = 798

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -3

Query: 193 GSDDSLFLSIVCSPLSHSLQGHDRRTSQ 110
           G+D +LF+    SP  H  QG D  T +
Sbjct: 290 GADGTLFIPDASSPTEHDSQGKDVNTQR 317


>02_05_0910 - 32684836-32685259,32685911-32685987,32686179-32686421
          Length = 247

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = -2

Query: 293 QEQRVPVLHLQPMMQLVQHSQSIPHELAAALPLWERRQPV 174
           +E++   LHL P   L     S     AAALPL+ +   V
Sbjct: 46  EEKKSERLHLHPNADLADDDSSAAMRAAAALPLFPQDNAV 85


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,613,845
Number of Sequences: 37544
Number of extensions: 179073
Number of successful extensions: 531
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 525
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 531
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 672845152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)