Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_H05
         (393 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z37983-1|CAA86061.1|  276|Caenorhabditis elegans Hypothetical pr...    62   1e-10
AF016451-6|AAB66000.2|  379|Caenorhabditis elegans Serpentine re...    30   0.68 
AL132952-19|CAB63382.2| 1677|Caenorhabditis elegans Hypothetical...    29   0.90 

>Z37983-1|CAA86061.1|  276|Caenorhabditis elegans Hypothetical
           protein B0393.1 protein.
          Length = 276

 Score = 62.5 bits (145), Expect = 1e-10
 Identities = 29/55 (52%), Positives = 39/55 (70%), Gaps = 5/55 (9%)
 Frame = +1

Query: 10  KSSHSIGLMWWLLAREVLRLRGVLSRDQRW-----DVVVDLFFYRDPVESVKEES 159
           K   SIGLMWW+LARE+L LRG +SR   +     +++ DL+FYRDP E+ KEE+
Sbjct: 166 KGERSIGLMWWMLAREILILRGKISRQTGFVLEGKEIMPDLYFYRDPTETEKEET 220


>AF016451-6|AAB66000.2|  379|Caenorhabditis elegans Serpentine
           receptor, class w protein140 protein.
          Length = 379

 Score = 29.9 bits (64), Expect = 0.68
 Identities = 16/37 (43%), Positives = 23/37 (62%)
 Frame = -1

Query: 162 FALLFHTLYRVTIEEQVNDNIPTLVTTKNTTESQYFT 52
           F     TL+ V+  ++VN N  +L +TKN+TESQ  T
Sbjct: 238 FVYPIFTLFLVSELKKVNKNRQSLSSTKNSTESQKTT 274


>AL132952-19|CAB63382.2| 1677|Caenorhabditis elegans Hypothetical
           protein Y51H4A.12 protein.
          Length = 1677

 Score = 29.5 bits (63), Expect = 0.90
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = -2

Query: 305 YQM*QEQRVPVLHLQPMMQLVQHSQSIPHELAAALPLWERRQPVP 171
           YQM  +Q+    H  PM Q  +HS      L  A+PL ++  P P
Sbjct: 707 YQMHHQQQQQHHHQMPMDQRKRHSSGRYDALMGAMPLQQQPPPPP 751


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,865,759
Number of Sequences: 27780
Number of extensions: 144882
Number of successful extensions: 381
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 360
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 377
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 598330768
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)