Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_H04
(417 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 34 0.008
SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces pomb... 31 0.095
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom... 30 0.13
SPBC19C7.01 ||SPBC32F12.13c|Mago binding protein homolog|Schizos... 29 0.38
SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr 1|... 28 0.67
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 27 0.88
SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces p... 27 1.2
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce... 27 1.2
SPCC1259.08 |||conserved fungal protein|Schizosaccharomyces pomb... 27 1.5
SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit Psm3|Sch... 27 1.5
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S... 26 2.0
SPBC577.15c |||NASP family histone binding protein|Schizosacchar... 26 2.0
SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces... 26 2.0
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 26 2.7
SPBC20F10.02c |||DUF1741 family protein|Schizosaccharomyces pomb... 26 2.7
SPAC1556.05c |||CGR1 family|Schizosaccharomyces pombe|chr 1|||Ma... 26 2.7
SPAC9E9.04 |||bcap family homolog|Schizosaccharomyces pombe|chr ... 26 2.7
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub... 26 2.7
SPBC800.10c |||EPS15 repeat family actin cortical patch componen... 26 2.7
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 25 3.6
SPAC1D4.01 ||SPAC1F3.11|sequence orphan|Schizosaccharomyces pomb... 25 3.6
SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA syntheta... 25 4.7
SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase |S... 25 4.7
SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces p... 25 4.7
SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces pomb... 25 6.2
SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces pom... 25 6.2
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch... 25 6.2
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 25 6.2
SPAC1F8.06 |fta5|sma5|Sim4 and Mal2 associated |Schizosaccharomy... 24 8.2
SPBC13E7.08c |||RNA polymerase II associated Paf1 complex |Schiz... 24 8.2
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 34.3 bits (75), Expect = 0.008
Identities = 18/46 (39%), Positives = 27/46 (58%)
Frame = +3
Query: 99 RTQILNSEKELNREKKDKEAVKSQAESLNKEYDRLAEEHSKLQKKL 236
+T+I N EKE++ + DKE + Q ++L+ E L EHS Q L
Sbjct: 1520 KTEISNLEKEIHELRSDKEGLVQQVQNLSAELAAL-REHSPTQGSL 1564
Score = 27.1 bits (57), Expect = 1.2
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +3
Query: 99 RTQILNSEKELNREKKDKEAVKSQAESLNKEYDRLAEEHS 218
+ ++ N KEL + + EA++ + ESL +L E S
Sbjct: 1436 KQELTNKNKELTSKNAENEAMQKEIESLKDSNHQLQESAS 1475
Score = 25.0 bits (52), Expect = 4.7
Identities = 10/37 (27%), Positives = 21/37 (56%)
Frame = +3
Query: 114 NSEKELNREKKDKEAVKSQAESLNKEYDRLAEEHSKL 224
+S KEL ++ +D K A S K+Y+++ + ++
Sbjct: 1028 SSSKELAKQLEDAVREKDSALSFKKDYEKIRSDADRV 1064
>SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 497
Score = 30.7 bits (66), Expect = 0.095
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +3
Query: 117 SEKELNREKKDKEAVKSQAESLNKEYDRLAEEHSKLQKK 233
SEK +EKKDK+ K + + D +EE K +KK
Sbjct: 455 SEKPSKKEKKDKKEKKKEKSKKKRSADDASEEVKKSKKK 493
>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1125
Score = 30.3 bits (65), Expect = 0.13
Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Frame = +3
Query: 102 TQILNSEKELNREKKDKEAVKSQAESLNKEYDRLAEEHSKLQKK-LPVTSGGDSKKDE*M 278
T IL+ E L RE+ +K ++ + +L EY+ + E LQ + L + S + +
Sbjct: 786 TAILSFEDSLRRERDEKSTLQQKCLNLQYEYENVRIELENLQSRALELESALEQSVSDAK 845
Query: 279 YQFILSCTGL 308
Y + +GL
Sbjct: 846 YSKAIMQSGL 855
Score = 25.0 bits (52), Expect = 4.7
Identities = 12/44 (27%), Positives = 25/44 (56%)
Frame = +3
Query: 105 QILNSEKELNREKKDKEAVKSQAESLNKEYDRLAEEHSKLQKKL 236
++LNS+++L K +V ++ L+ + + L E+ Q+KL
Sbjct: 906 ELLNSQQKLYDLKHSYSSVMTEKSKLSDQVNDLTEQAKITQRKL 949
>SPBC19C7.01 ||SPBC32F12.13c|Mago binding protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 196
Score = 28.7 bits (61), Expect = 0.38
Identities = 24/53 (45%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
Frame = +3
Query: 120 EKELNREKKDKEAVKSQAESLNKEYDRLAEEH-SK-LQKKLPVT-SGGDSKKD 269
E+ L+ +KK+K K AESL +YD + E+ SK K L T S DSKKD
Sbjct: 91 ERPLSNKKKEKNDHK--AESLKHDYDSVGEKRISKDSVKHLDKTYSSIDSKKD 141
>SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 623
Score = 27.9 bits (59), Expect = 0.67
Identities = 16/45 (35%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Frame = +3
Query: 114 NSEKELNREKKDKEAVKSQAESLNKE-YDRLAEEHSKLQKKLPVT 245
+++ +++KK K+ KSQ + LN+E Y RL + LQK L ++
Sbjct: 52 SNDDSQSKKKKKKKLKKSQ-QPLNEENYPRLQTTENNLQKPLKIS 95
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 27.5 bits (58), Expect = 0.88
Identities = 16/49 (32%), Positives = 27/49 (55%)
Frame = +3
Query: 120 EKELNREKKDKEAVKSQAESLNKEYDRLAEEHSKLQKKLPVTSGGDSKK 266
EKE R+KK + + + E +E +RLAE+ + QK L +++K
Sbjct: 593 EKEKKRDKKKQLKLAKEEERQRREAERLAEQAA--QKALEAKRQEEARK 639
>SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 202
Score = 27.1 bits (57), Expect = 1.2
Identities = 16/51 (31%), Positives = 29/51 (56%)
Frame = +3
Query: 114 NSEKELNREKKDKEAVKSQAESLNKEYDRLAEEHSKLQKKLPVTSGGDSKK 266
+S++E +++KK+K K + + L K+ RL + S QK+ +SKK
Sbjct: 138 SSKREKSKKKKEK---KEKKDKLKKKSKRLKLDDSHTQKRKRKVRDKESKK 185
>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2104
Score = 27.1 bits (57), Expect = 1.2
Identities = 11/39 (28%), Positives = 23/39 (58%)
Frame = +3
Query: 120 EKELNREKKDKEAVKSQAESLNKEYDRLAEEHSKLQKKL 236
EK+L+ KKD++ + S+ + L K+Y + ++ + L
Sbjct: 950 EKKLSSIKKDEQTISSKYKELEKDYLNIMADYQHSSQHL 988
>SPCC1259.08 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 394
Score = 26.6 bits (56), Expect = 1.5
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = -1
Query: 159 QPPCLSFLCSVPFPNSK 109
QP CL+F CS+ NSK
Sbjct: 299 QPACLAFACSLTHANSK 315
>SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit
Psm3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1194
Score = 26.6 bits (56), Expect = 1.5
Identities = 17/56 (30%), Positives = 26/56 (46%)
Frame = +3
Query: 102 TQILNSEKELNREKKDKEAVKSQAESLNKEYDRLAEEHSKLQKKLPVTSGGDSKKD 269
++I E EL+ A+ S+A+ LNK L + L K TS +KK+
Sbjct: 335 SKISEKENELSEILPKYNAIVSEADDLNKRIMLLKNQKQSLLDKQSRTSQFTTKKE 390
>SPCC1827.04 |||ankyrin repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 3|||Manual
Length = 600
Score = 26.2 bits (55), Expect = 2.0
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +3
Query: 120 EKELNREKKDKEAVKSQAESLNKEYDRL-AEEHS 218
+KE E + KEA++ E ++YD+L E HS
Sbjct: 528 DKERQEELRRKEAMQKIEEQSKRDYDKLHGEGHS 561
>SPBC577.15c |||NASP family histone binding
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 396
Score = 26.2 bits (55), Expect = 2.0
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = +3
Query: 108 ILNSEKELNREKKDKEAVKSQAESLNKEYDRLAEEHSKL-QKKLPVTSGGDSKKD 269
+LN + +KK K K++ +L + + L E S+L QK L + G S ++
Sbjct: 280 VLNERENEVTDKKGKGKQKAEESTLTSDLENLREMLSELEQKTLDLKHGAPSLEE 334
>SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 26.2 bits (55), Expect = 2.0
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +3
Query: 102 TQILNSEKELNREKKDKEAVKSQAESLNKEYDRLAEEHSKLQKK 233
T+I+N EL + KD + + + + +YDR KLQ+K
Sbjct: 126 TRIVNPTGELLKIVKDVDKLLLKRDHKQLDYDRHRSSFKKLQEK 169
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 25.8 bits (54), Expect = 2.7
Identities = 13/26 (50%), Positives = 20/26 (76%)
Frame = +3
Query: 102 TQILNSEKELNREKKDKEAVKSQAES 179
+++LN EK+L KD++AVKS+ ES
Sbjct: 1603 SKVLNLEKDL----KDRQAVKSEEES 1624
>SPBC20F10.02c |||DUF1741 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 600
Score = 25.8 bits (54), Expect = 2.7
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 6/36 (16%)
Frame = +2
Query: 272 INVSIYFVLHRSDFLFRS------YGNYLLMQHKYT 361
+ +S+ FVLH FL+ S YGNY + YT
Sbjct: 146 VEISLRFVLHFVSFLYNSSFISHIYGNYDVFSTLYT 181
>SPAC1556.05c |||CGR1 family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 111
Score = 25.8 bits (54), Expect = 2.7
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +3
Query: 105 QILNSEKELNREKKDKEAVKSQAESLNKEYDRLAEEHSKLQKKL 236
+I EKEL REK+++ A ++ ++ E LQ KL
Sbjct: 47 EIKEREKELKREKEEQRAAHAEKIRTRRQAKADRERMELLQAKL 90
>SPAC9E9.04 |||bcap family homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 188
Score = 25.8 bits (54), Expect = 2.7
Identities = 9/29 (31%), Positives = 22/29 (75%)
Frame = +3
Query: 144 KDKEAVKSQAESLNKEYDRLAEEHSKLQK 230
++ E ++++ E+ +KEY+ LAE+++ + K
Sbjct: 152 EELETLRTKLETRDKEYETLAEKYAAVTK 180
>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 544
Score = 25.8 bits (54), Expect = 2.7
Identities = 12/39 (30%), Positives = 23/39 (58%)
Frame = +3
Query: 120 EKELNREKKDKEAVKSQAESLNKEYDRLAEEHSKLQKKL 236
+KE R K++KE + + E +E +++A + K +KL
Sbjct: 92 QKEAERLKREKERQQREQEKKLREQEKIAAKKMKELEKL 130
>SPBC800.10c |||EPS15 repeat family actin cortical patch component
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1116
Score = 25.8 bits (54), Expect = 2.7
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Frame = +3
Query: 120 EKELNREKK---DKEAVKSQAESLNKEYDRLAEEHSKLQKK 233
++EL + K+ D E K+Q E +N+EY L + LQK+
Sbjct: 548 DEELAKAKQISLDIETNKAQTEQVNREYSILEATLNALQKQ 588
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 25.4 bits (53), Expect = 3.6
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +3
Query: 126 ELNREKKDKEAVKSQAESLNKEYDRLAEEHSKL 224
ELN K +K+ K E L E D+L E +L
Sbjct: 753 ELNASKGEKDLRKRTQERLISENDKLLAERERL 785
>SPAC1D4.01 ||SPAC1F3.11|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 285
Score = 25.4 bits (53), Expect = 3.6
Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Frame = +3
Query: 111 LNSEKELNREKKDKEAVKSQAESLNKEYDRLAEEHSKL-QKKLPVTSGGDSKK 266
+N+EK LN+E K KE + A ++ D+ + + SKL + +LP +K+
Sbjct: 88 INAEKLLNQETK-KEKQLNTANEPHEANDQTSAQSSKLIEAQLPTVEDRFAKQ 139
>SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA synthetases
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 450
Score = 25.0 bits (52), Expect = 4.7
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +3
Query: 120 EKELNREKKDKEAVKSQAESLNKEYDRLA 206
EK+ +EKKDK+ K + E KE + A
Sbjct: 247 EKQNKKEKKDKKDKKDKKEKAPKEPPKAA 275
>SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 362
Score = 25.0 bits (52), Expect = 4.7
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +3
Query: 123 KELNREKKDKEAVKSQAESLNKEYDRLAEEHSK 221
+ELN +++D E + + D +AE+HSK
Sbjct: 173 EELNSDEEDAEQAEEEILEKPVPKDEVAEKHSK 205
>SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 480
Score = 25.0 bits (52), Expect = 4.7
Identities = 10/38 (26%), Positives = 23/38 (60%)
Frame = +3
Query: 120 EKELNREKKDKEAVKSQAESLNKEYDRLAEEHSKLQKK 233
++ NRE +K+ ++++ + L E +R +E + +KK
Sbjct: 110 QERFNRELLEKKRIEAERQRLKDEEERRKKELMEKEKK 147
Score = 24.6 bits (51), Expect = 6.2
Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 3/41 (7%)
Frame = +3
Query: 120 EKEL-NREKKDKEAVKSQAESLNKEYD--RLAEEHSKLQKK 233
+KEL +EKK+KE ++ E +KE + RL +E ++K
Sbjct: 138 KKELMEKEKKEKERIRLIEEQKHKENEQRRLKQEQIDAKRK 178
>SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 508
Score = 24.6 bits (51), Expect = 6.2
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +3
Query: 117 SEKELNREKKDKEAVKSQAESLNKEYDRLAEEHSKLQK 230
S K+ +EKKDK+ KS+ +S E ++ K +K
Sbjct: 468 SSKKEKKEKKDKKHKKSKRKSEESEDGESPKKKKKSKK 505
>SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 736
Score = 24.6 bits (51), Expect = 6.2
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +3
Query: 120 EKELNREKKDKEAVKSQAESLNKEYDRLAEEHSKLQKKL 236
EKEL KD+ A ++ + L +E D L +Q KL
Sbjct: 284 EKELEELSKDQTADQAISRRLERERDELDLRLLDIQNKL 322
>SPCC663.03 |pmd1||leptomycin efflux transporter
Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1362
Score = 24.6 bits (51), Expect = 6.2
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = +3
Query: 186 KEYDRLAEEHSKLQKKLPVTSGGDSKKDE*M 278
K+ + + EE +++P+TS GD +D M
Sbjct: 673 KDQEMVEEELEDAPREIPITSFGDDDEDNDM 703
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 24.6 bits (51), Expect = 6.2
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +3
Query: 141 KKDKEAVKSQAESLNKEYDRLAEEHSKLQKKL 236
K++ E K +ESL D L + +KLQ ++
Sbjct: 361 KENSEKFKQNSESLKSRVDNLNDYITKLQNEI 392
>SPAC1F8.06 |fta5|sma5|Sim4 and Mal2 associated |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 385
Score = 24.2 bits (50), Expect = 8.2
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = -2
Query: 287 KLIHLFIFFRIPTTSNW 237
K I FFR+P T NW
Sbjct: 255 KTIVYQFFFRVPATDNW 271
>SPBC13E7.08c |||RNA polymerase II associated Paf1 complex
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 429
Score = 24.2 bits (50), Expect = 8.2
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +3
Query: 141 KKDKEAVKSQAESLNKEYDRLAEEHSKLQKKLPVTSGGDSKKDE 272
+KD E +K QAE +E R A + +K+L G +++E
Sbjct: 240 EKDPELLKRQAEKYEEERSR-ARRRLEKRKQLNNYQNGTGEEEE 282
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,304,890
Number of Sequences: 5004
Number of extensions: 23391
Number of successful extensions: 132
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 146319408
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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