Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_H04
(417 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_01_0256 + 3402982-3402984,3403077-3403158,3403307-3403449,340... 37 0.006
04_01_0227 - 2877303-2877659,2877755-2877897,2878102-2878183,287... 35 0.030
02_02_0677 + 12859101-12859413,12862450-12862817 33 0.092
12_01_0978 + 9908001-9908175,9908538-9908619,9910793-9910904,991... 32 0.21
03_06_0670 + 35434203-35434355,35436601-35436729,35436978-354384... 31 0.49
05_06_0027 - 25029725-25030017,25030097-25030211,25030347-250305... 30 0.86
02_03_0387 - 18412064-18412144,18412280-18412361,18412922-184131... 30 0.86
09_06_0203 + 21555747-21555805,21555862-21555939,21556034-215560... 29 1.5
05_01_0146 - 953957-956278,956468-956786,957185-957213 29 1.5
02_04_0290 - 21627733-21628353,21628424-21628663,21628874-216292... 28 2.6
01_06_1261 - 35826513-35828941,35829201-35829294 28 2.6
03_01_0423 + 3240224-3240394,3241464-3241628,3242322-3242339,324... 28 3.5
06_03_1159 + 28084786-28085428,28085520-28086166 27 4.6
11_06_0315 + 22318155-22318210,22319743-22319769,22319868-223199... 27 6.0
08_01_0063 + 439640-439740,440067-440145,440586-440684,440767-44... 27 6.0
07_01_0784 + 6083477-6083653,6086052-6086238,6086672-6086844,608... 27 6.0
05_07_0112 - 27755604-27756449,27756624-27756887,27757428-277575... 27 6.0
03_02_0834 - 11630288-11630500,11630531-11630623,11630844-116310... 27 6.0
09_04_0153 + 15179064-15179210,15179598-15179668,15179831-151800... 27 8.0
>04_01_0256 +
3402982-3402984,3403077-3403158,3403307-3403449,
3403557-3403832,3404136-3404315
Length = 227
Score = 37.1 bits (82), Expect = 0.006
Identities = 17/40 (42%), Positives = 27/40 (67%)
Frame = +3
Query: 117 SEKELNREKKDKEAVKSQAESLNKEYDRLAEEHSKLQKKL 236
+E+E R K+DKE + + ++ KE RL EE+ KLQ+K+
Sbjct: 121 AEEEQKRLKRDKENLNLKVDTKRKENRRLEEENKKLQRKI 160
>04_01_0227 -
2877303-2877659,2877755-2877897,2878102-2878183,
2878289-2878291
Length = 194
Score = 34.7 bits (76), Expect = 0.030
Identities = 15/41 (36%), Positives = 29/41 (70%)
Frame = +3
Query: 114 NSEKELNREKKDKEAVKSQAESLNKEYDRLAEEHSKLQKKL 236
++++EL K++KE + ++ E+ +E RL EE+ KLQ+K+
Sbjct: 141 DAKEELKITKREKEYLNTKLETKREENKRLDEENKKLQRKI 181
>02_02_0677 + 12859101-12859413,12862450-12862817
Length = 226
Score = 33.1 bits (72), Expect = 0.092
Identities = 15/46 (32%), Positives = 29/46 (63%)
Frame = +3
Query: 99 RTQILNSEKELNREKKDKEAVKSQAESLNKEYDRLAEEHSKLQKKL 236
+ Q+ +E++ + A++ Q+ESL EYDRL E++ L+++L
Sbjct: 170 KLQVQEKTEEVHVAEDKALAIRKQSESLLLEYDRLLEDNQHLREQL 215
>12_01_0978 +
9908001-9908175,9908538-9908619,9910793-9910904,
9911965-9913737
Length = 713
Score = 31.9 bits (69), Expect = 0.21
Identities = 12/44 (27%), Positives = 31/44 (70%)
Frame = +3
Query: 102 TQILNSEKELNREKKDKEAVKSQAESLNKEYDRLAEEHSKLQKK 233
T++ ++++ L + +++ +++S ESL +E + + EEH +L++K
Sbjct: 375 TELDDAKEMLQKVAEEESSLRSLVESLKQELEAVKEEHDQLKQK 418
>03_06_0670 +
35434203-35434355,35436601-35436729,35436978-35438409,
35438524-35439014
Length = 734
Score = 30.7 bits (66), Expect = 0.49
Identities = 18/38 (47%), Positives = 25/38 (65%), Gaps = 2/38 (5%)
Frame = +3
Query: 120 EKELNREKK-DKEAVKSQAE-SLNKEYDRLAEEHSKLQ 227
EK+ ++EKK DKEA K + E + NKE+D+L E Q
Sbjct: 491 EKDKHKEKKRDKEAKKEKDEQNNNKEHDKLRENSINYQ 528
>05_06_0027 -
25029725-25030017,25030097-25030211,25030347-25030504,
25030582-25030682,25030846-25030994,25031089-25031239,
25031329-25031482,25032249-25032321,25032446-25032676
Length = 474
Score = 29.9 bits (64), Expect = 0.86
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +3
Query: 111 LNSEKELNREKKDKEAVKSQAESLNKEYDRLAEEHSKLQKKLP 239
L SE + R + + +EY R+A+ SKL+KKLP
Sbjct: 386 LMSESRIKRVARGSGRTMKDVTDMLEEYKRIAKVCSKLKKKLP 428
>02_03_0387 -
18412064-18412144,18412280-18412361,18412922-18413142,
18413387-18413745,18413834-18414443,18414546-18414605,
18414685-18414751,18414843-18414936,18415012-18415125,
18415242-18415308,18415386-18415551,18416587-18417080
Length = 804
Score = 29.9 bits (64), Expect = 0.86
Identities = 16/52 (30%), Positives = 26/52 (50%)
Frame = +3
Query: 117 SEKELNREKKDKEAVKSQAESLNKEYDRLAEEHSKLQKKLPVTSGGDSKKDE 272
+E++ RE+KD++ KS+ +KE + K + K GGD K E
Sbjct: 86 AERDKERERKDRDKEKSRGRDKSKEEREDKDYRDKSRGKDRGDDGGDLSKGE 137
>09_06_0203 +
21555747-21555805,21555862-21555939,21556034-21556091,
21556191-21556235,21556514-21556549,21556855-21556935,
21557016-21557087,21557184-21557195
Length = 146
Score = 29.1 bits (62), Expect = 1.5
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = +3
Query: 144 KDKEAVKSQAESLNKEYDRLAEEHSKLQKKLPVTSG-GDSKKDE 272
KDK ++AE L EY + + ++ Q P TSG D K E
Sbjct: 92 KDKAPFVTKAEKLKAEYTKKIDAYNNKQAGGPATSGDSDKSKSE 135
>05_01_0146 - 953957-956278,956468-956786,957185-957213
Length = 889
Score = 29.1 bits (62), Expect = 1.5
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +3
Query: 132 NREKKDKEAVKSQAESLNKEYDRLAEEHSKLQKK 233
+RE+K+K AV+ +L++E D+ E H + K
Sbjct: 492 DREEKEKRAVEDLTAALSEESDKAKEAHERYLSK 525
>02_04_0290 -
21627733-21628353,21628424-21628663,21628874-21629214,
21630934-21631612,21631893-21631962,21632063-21632190
Length = 692
Score = 28.3 bits (60), Expect = 2.6
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +3
Query: 141 KKDKEAVKSQAESLNKEYDRLAEEHSKLQKKLPVTSGG 254
KKD +K + ES+ +Y L E LQK++ GG
Sbjct: 587 KKDINTLKFELESMKAKYLELQHEMDALQKQVDGRGGG 624
>01_06_1261 - 35826513-35828941,35829201-35829294
Length = 840
Score = 28.3 bits (60), Expect = 2.6
Identities = 12/37 (32%), Positives = 23/37 (62%)
Frame = +3
Query: 126 ELNREKKDKEAVKSQAESLNKEYDRLAEEHSKLQKKL 236
++NR K + + ++ + +SL E L E+ SKL ++L
Sbjct: 351 QINRMKNEADELQKRLDSLEDEKAALIEDSSKLSERL 387
>03_01_0423 + 3240224-3240394,3241464-3241628,3242322-3242339,
3242494-3242836,3244138-3248540,3248928-3249107,
3249108-3250892,3251055-3252173
Length = 2727
Score = 27.9 bits (59), Expect = 3.5
Identities = 14/45 (31%), Positives = 27/45 (60%)
Frame = +3
Query: 99 RTQILNSEKELNREKKDKEAVKSQAESLNKEYDRLAEEHSKLQKK 233
+ +IL KEL+ ++ + +S+ +L K+YD L +E+ L +K
Sbjct: 1979 KIEILGLCKELSGLRQSYQTSQSEICNLTKKYDSLLQEYKVLVEK 2023
>06_03_1159 + 28084786-28085428,28085520-28086166
Length = 429
Score = 27.5 bits (58), Expect = 4.6
Identities = 12/40 (30%), Positives = 27/40 (67%)
Frame = +3
Query: 105 QILNSEKELNREKKDKEAVKSQAESLNKEYDRLAEEHSKL 224
++ N+E+ + R ++ +EAVK +A L+K++ R + ++L
Sbjct: 251 KVHNAERSVARFEEFREAVKGKAARLSKKHPRCLADGNEL 290
>11_06_0315 +
22318155-22318210,22319743-22319769,22319868-22319990,
22320867-22321110,22321487-22321981
Length = 314
Score = 27.1 bits (57), Expect = 6.0
Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Frame = +3
Query: 105 QILNSEKELNREKKDKEAVKSQAESL---NKEYDRLAEEHSKLQKKLPVTSGGDSKKD 269
++ K L K+DK+AVK ++ +KE + ++ +L+K L + S+KD
Sbjct: 196 KVSKESKPLKDSKEDKKAVKEDKKAAAKDSKEQKKALKDSKELKKALKDSKEQGSQKD 253
>08_01_0063 +
439640-439740,440067-440145,440586-440684,440767-440880,
441218-441381,442237-442312,442502-442587,442706-442861,
442934-443264
Length = 401
Score = 27.1 bits (57), Expect = 6.0
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +3
Query: 153 EAVKSQAESLNKEYDRLAEEHSKLQKKLPVTSGGDSKKDE 272
E V SQA LN+E ++ H L P T+ + K+E
Sbjct: 242 EVVVSQAIELNEELHKVLVRHDALLSVQPTTTVASTLKEE 281
>07_01_0784 +
6083477-6083653,6086052-6086238,6086672-6086844,
6087520-6087678,6088677-6088817,6088880-6088941,
6089120-6089255,6091142-6091236,6091333-6091448,
6091538-6091667,6091757-6091811,6091889-6091930,
6092534-6092656
Length = 531
Score = 27.1 bits (57), Expect = 6.0
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +3
Query: 159 VKSQAESLNKEYDRLAEEHSKLQKKLPVTSGGDSKK 266
V+SQ E LNK + ++HS P G+S K
Sbjct: 56 VRSQNEDLNKPLLEILDDHSSQSNTFPGNVVGESSK 91
>05_07_0112 - 27755604-27756449,27756624-27756887,27757428-27757532,
27757626-27758249,27759048-27759596,27759665-27760372,
27760449-27760658,27761266-27761421,27761524-27761664,
27762015-27762101,27762209-27762309,27763071-27763293,
27763384-27763548,27763621-27763713,27763801-27764292,
27764729-27764805,27765184-27765681,27765818-27766046
Length = 1855
Score = 27.1 bits (57), Expect = 6.0
Identities = 10/34 (29%), Positives = 21/34 (61%)
Frame = +3
Query: 120 EKELNREKKDKEAVKSQAESLNKEYDRLAEEHSK 221
+ E N + +E+ + +E +N+EYD L ++S+
Sbjct: 1736 DDEDNSASQSEESSEENSEPMNEEYDELLPDYSR 1769
>03_02_0834 -
11630288-11630500,11630531-11630623,11630844-11631050,
11631301-11633089,11633817-11634145
Length = 876
Score = 27.1 bits (57), Expect = 6.0
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = +3
Query: 126 ELNREKKDKEAVKSQAESLNKEYDRLAEEHSKLQKKLPVTSGGDSK 263
EL + KK+ + + + LN + AEE +++ + L GGD+K
Sbjct: 461 ELQKVKKEHDTLLKSSVELNDNLTKTAEERNQILECLK-EKGGDNK 505
>09_04_0153 +
15179064-15179210,15179598-15179668,15179831-15180017,
15180107-15180298
Length = 198
Score = 26.6 bits (56), Expect = 8.0
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = +3
Query: 144 KDKEAVKSQAESLNKEYDRLAEEHSKLQKKLPVTSGGDSKK 266
KD E + + ES+NK L E LQKKL DS++
Sbjct: 49 KDNEMKRRKLESINKRKLVLLSEVKFLQKKLNSFKKNDSQQ 89
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,138,679
Number of Sequences: 37544
Number of extensions: 139887
Number of successful extensions: 470
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 440
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 469
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 754585524
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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