Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_H03
         (537 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    29   0.58 
SPAC24C9.08 |||vacuolar carboxypeptidase |Schizosaccharomyces po...    27   1.8  
SPBC15D4.14 |taf73||TATA-binding protein associated factor |Schi...    26   3.1  
SPCC1672.09 |||triglyceride lipase-cholesterol esterase |Schizos...    25   7.2  

>SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 217

 Score = 28.7 bits (61), Expect = 0.58
 Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
 Frame = +1

Query: 364 ILIKNCFSNEHFLFI*HAFFKFLSYPKCFFL---CFKFFGSAHRF 489
           IL  + F   H +     FF FLS+P   F+   CF  F S++ F
Sbjct: 165 ILSHSLFHISHLISFHFLFFSFLSFPLLSFILFPCFSLFLSSNSF 209


>SPAC24C9.08 |||vacuolar carboxypeptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 596

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = -2

Query: 212 YSKSALASRVRPLCDETVTPESLPMNTDIKHY 117
           Y K A A R       +VTP  +P NTD +HY
Sbjct: 508 YKKLAGAIRYTFGDGTSVTPALMPANTDTRHY 539


>SPBC15D4.14 |taf73||TATA-binding protein associated factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -2

Query: 272 NFQGFVTQRAGGSGRDRDLF-YSKSALASRVRPLCDETVT 156
           N Q  ++++ G  G    L  Y+K ++   +RPL +E VT
Sbjct: 214 NEQTIISEQEGIPGHSEQLLDYNKQSIQLGLRPLSEEVVT 253


>SPCC1672.09 |||triglyceride lipase-cholesterol esterase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 467

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = -1

Query: 306 HLIKIENTYSLKLSRFRHAASGRVGT-RPRSL 214
           HL++ E+ Y L + R    + GR+G+  P+ L
Sbjct: 95  HLVRTEDDYILCIHRISKDSPGRIGSPHPKKL 126


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,963,647
Number of Sequences: 5004
Number of extensions: 35792
Number of successful extensions: 73
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 222442660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)