Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_H03
         (537 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70205-11|CAD44096.1|  409|Caenorhabditis elegans Hypothetical p...    28   3.7  
Z70205-10|CAA94122.2|  887|Caenorhabditis elegans Hypothetical p...    28   3.7  
Z68003-6|CAD44105.1|  409|Caenorhabditis elegans Hypothetical pr...    28   3.7  
Z68003-5|CAA91979.2|  887|Caenorhabditis elegans Hypothetical pr...    28   3.7  

>Z70205-11|CAD44096.1|  409|Caenorhabditis elegans Hypothetical
           protein E02H4.3b protein.
          Length = 409

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
 Frame = -2

Query: 530 IFDLIENESYFNSMKRCALPKNLKQRKKHFG-*DKNLKKACQMN 402
           +F+LIEN   F  + R  LP+ L+ R  +F    +NLK  C+M+
Sbjct: 358 LFELIENMLMFEPLARMKLPEALQHR--YFNRLPENLKIPCKMD 399


>Z70205-10|CAA94122.2|  887|Caenorhabditis elegans Hypothetical
           protein E02H4.3a protein.
          Length = 887

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
 Frame = -2

Query: 530 IFDLIENESYFNSMKRCALPKNLKQRKKHFG-*DKNLKKACQMN 402
           +F+LIEN   F  + R  LP+ L+ R  +F    +NLK  C+M+
Sbjct: 836 LFELIENMLMFEPLARMKLPEALQHR--YFNRLPENLKIPCKMD 877


>Z68003-6|CAD44105.1|  409|Caenorhabditis elegans Hypothetical
           protein E02H4.3b protein.
          Length = 409

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
 Frame = -2

Query: 530 IFDLIENESYFNSMKRCALPKNLKQRKKHFG-*DKNLKKACQMN 402
           +F+LIEN   F  + R  LP+ L+ R  +F    +NLK  C+M+
Sbjct: 358 LFELIENMLMFEPLARMKLPEALQHR--YFNRLPENLKIPCKMD 399


>Z68003-5|CAA91979.2|  887|Caenorhabditis elegans Hypothetical
           protein E02H4.3a protein.
          Length = 887

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
 Frame = -2

Query: 530 IFDLIENESYFNSMKRCALPKNLKQRKKHFG-*DKNLKKACQMN 402
           +F+LIEN   F  + R  LP+ L+ R  +F    +NLK  C+M+
Sbjct: 836 LFELIENMLMFEPLARMKLPEALQHR--YFNRLPENLKIPCKMD 877


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,781,747
Number of Sequences: 27780
Number of extensions: 200280
Number of successful extensions: 451
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 448
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 451
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1070714938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)