Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_H02
         (476 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr 2|||Ma...    26   3.4  
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    25   4.5  
SPAC3A11.05c |kms1||meiotic spindle pole body protein Kms1|Schiz...    25   5.9  

>SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 629

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
 Frame = +3

Query: 135 CSVYLFLFILYY--FQITKKPLVRFVFSIYLYFI*SLIYTSLEF 260
           C +Y+F+F ++Y  F+I+   L   V    LYF  SL+ + L F
Sbjct: 565 CGIYVFIFSVFYWFFKISSSSLATAV----LYFGYSLLISVLVF 604


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2685

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -1

Query: 236 GLNKI*INRKHKSHQRFF 183
           GLN I +N+K+ SH+ FF
Sbjct: 336 GLNLILLNKKNPSHRMFF 353


>SPAC3A11.05c |kms1||meiotic spindle pole body protein
           Kms1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 607

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -1

Query: 476 DMDSVYNLYDFSIHG*FHEINFQTYITEKTIL 381
           D D +++ YDF   G  H  NF   I +  +L
Sbjct: 6   DFDLIFDSYDFKHEGKVHLSNFLPIINDLQLL 37


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,615,885
Number of Sequences: 5004
Number of extensions: 27456
Number of successful extensions: 55
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 184476110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)