Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_H01
         (478 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0963 - 12769715-12769859,12770639-12770889                       87   5e-18
07_03_1662 + 28447419-28447666,28448429-28448573                       85   4e-17
02_02_0457 + 10503801-10507358                                         28   4.5  
03_02_0927 - 12452262-12452428,12452538-12452607,12452689-124528...    27   7.8  

>03_02_0963 - 12769715-12769859,12770639-12770889
          Length = 131

 Score = 87.4 bits (207), Expect = 5e-18
 Identities = 43/95 (45%), Positives = 56/95 (58%), Gaps = 3/95 (3%)
 Frame = +2

Query: 122 IDCTHPAEDSILDVGNFEKYLKERVKVE-GKTNNLGNHVVIARDKTKVAINADIPFSXXX 298
           IDC  P +D I+++ + EK+L+ER+KV  GK  NLG  V ++RDKTKV + +D PFS   
Sbjct: 26  IDCAKPVDDKIMEIASLEKFLQERIKVAGGKAGNLGESVTVSRDKTKVTVTSDGPFSKRY 85

Query: 299 XXXXXXXXXXXXXXXDWLRVVASAHDS--YELRYF 397
                          DWLRV+AS  D   YELRYF
Sbjct: 86  LKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYF 120


>07_03_1662 + 28447419-28447666,28448429-28448573
          Length = 130

 Score = 84.6 bits (200), Expect = 4e-17
 Identities = 42/95 (44%), Positives = 56/95 (58%), Gaps = 3/95 (3%)
 Frame = +2

Query: 122 IDCTHPAEDSILDVGNFEKYLKERVKVE-GKTNNLGNHVVIARDKTKVAINADIPFSXXX 298
           IDC+ P ED I+++ + EK+L+ER+KV  GK  NLG+ V + RDKTKV + +D  FS   
Sbjct: 25  IDCSKPVEDKIMEIASLEKFLQERIKVAGGKAGNLGDSVTVTRDKTKVTVTSDGAFSKRY 84

Query: 299 XXXXXXXXXXXXXXXDWLRVVASAHDS--YELRYF 397
                          DWLRV+A+  D   YELRYF
Sbjct: 85  LKYLTKKYLKKHNVRDWLRVIAANKDRNVYELRYF 119


>02_02_0457 + 10503801-10507358
          Length = 1185

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -2

Query: 93  KKKANLPLGTLCREFCHLLLLSYQSSASCRI 1
           K   + P  +L +EFCHL  L   S+  CR+
Sbjct: 651 KISGDCPFKSLPQEFCHLYNLQIFSATKCRL 681


>03_02_0927 -
           12452262-12452428,12452538-12452607,12452689-12452830,
           12452937-12453117,12454068-12454203
          Length = 231

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
 Frame = +3

Query: 336 IFGTGSEWWLLHMTHMSFATSTS---MLIATMKTTRIKL 443
           IFG    WWL   + +SF T  S   +++  ++  RIK+
Sbjct: 62  IFGATMAWWLFEKSGLSFLTVCSDVLLILIVVQFIRIKV 100


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,132,869
Number of Sequences: 37544
Number of extensions: 204167
Number of successful extensions: 525
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 514
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 521
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 979080328
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)