Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_H01
         (478 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58760-2|AAK31460.1|  130|Caenorhabditis elegans Ribosomal prote...    75   4e-14
U00036-9|AAK29852.1|  377|Caenorhabditis elegans Hypothetical pr...    27   7.0  
Z70206-2|CAA94126.2|  771|Caenorhabditis elegans Hypothetical pr...    27   9.2  
CU457741-1|CAM36342.1|  347|Caenorhabditis elegans Hypothetical ...    27   9.2  
AF016656-3|AAB66037.2|  515|Caenorhabditis elegans Hypothetical ...    27   9.2  

>U58760-2|AAK31460.1|  130|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 22, isoform a protein.
          Length = 130

 Score = 74.5 bits (175), Expect = 4e-14
 Identities = 35/93 (37%), Positives = 55/93 (59%), Gaps = 1/93 (1%)
 Frame = +2

Query: 122 IDCTHPAEDSILDVGNFEKYLKERVKVEGKTNNL-GNHVVIARDKTKVAINADIPFSXXX 298
           ++C +P ED IL + + E +L E++KV GKT +L  N+V +   K+KV++ +++PFS   
Sbjct: 25  VECKNPVEDGILRIEDLEAFLNEKIKVNGKTGHLAANNVKVEVAKSKVSVVSEVPFSKRY 84

Query: 299 XXXXXXXXXXXXXXXDWLRVVASAHDSYELRYF 397
                          DWLRVVA   ++YE+RYF
Sbjct: 85  LKYLTKKYLKRNSLRDWLRVVAVNKNTYEVRYF 117


>U00036-9|AAK29852.1|  377|Caenorhabditis elegans Hypothetical
           protein R151.1 protein.
          Length = 377

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 10/42 (23%), Positives = 23/42 (54%)
 Frame = -1

Query: 463 KTILFINSLILVVFIVAISIDVEVAKLI*VMCRSHHSEPVPK 338
           KT + + S ILV+F++ ++    +  +I ++C     + + K
Sbjct: 266 KTTMLMESSILVIFLIVVACMSPICTMIVLLCLRRRKKEIKK 307


>Z70206-2|CAA94126.2|  771|Caenorhabditis elegans Hypothetical
           protein C49F8.2 protein.
          Length = 771

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 11/43 (25%), Positives = 24/43 (55%)
 Frame = +3

Query: 336 IFGTGSEWWLLHMTHMSFATSTSMLIATMKTTRIKLFINKIVL 464
           +FGT ++W   H+T +  ++   + I  M +TRI   +  +++
Sbjct: 602 LFGTLADWTRKHITTIYASSMVGVGITIMFSTRINSLVELVIV 644


>CU457741-1|CAM36342.1|  347|Caenorhabditis elegans Hypothetical
           protein C42C1.1 protein.
          Length = 347

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 9/24 (37%), Positives = 18/24 (75%)
 Frame = -1

Query: 457 ILFINSLILVVFIVAISIDVEVAK 386
           I+FIN + ++ ++V +SID+ + K
Sbjct: 26  IIFINIVSILYYLVNVSIDIRIGK 49


>AF016656-3|AAB66037.2|  515|Caenorhabditis elegans Hypothetical
           protein C35A11.4 protein.
          Length = 515

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 315 SVTSRKTIFGTGSEWWLLHMTHM 383
           SV +   IFGT   WWL++ T +
Sbjct: 170 SVIAMPQIFGTEDLWWLIYATEI 192


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,599,581
Number of Sequences: 27780
Number of extensions: 181200
Number of successful extensions: 404
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 399
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 403
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 871571276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)