Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_G24
         (433 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0157 - 14547645-14547935                                         61   3e-10
03_05_0815 + 27917516-27917767,27918024-27918110,27918281-279183...    28   3.7  
05_04_0029 - 17321378-17321905,17323348-17323525,17323531-173239...    27   6.5  
12_01_0197 + 1456296-1456668,1456930-1458746                           27   8.6  
09_03_0215 + 13524418-13524465,13524856-13525171,13525291-135253...    27   8.6  
04_02_0007 + 8464923-8465155,8466037-8466591,8466645-8467662,846...    27   8.6  

>12_02_0157 - 14547645-14547935
          Length = 96

 Score = 61.3 bits (142), Expect = 3e-10
 Identities = 24/76 (31%), Positives = 41/76 (53%)
 Frame = +3

Query: 93  IDYVGQAKAEKLYRAIITLFSIVGFIWGYIVQQFSQSVYILGAGFLLAAVLTVPPWPMYR 272
           +D+ GQ  AE L + ++   ++  F+ GY +  F   + +   G +L A++TVP WP + 
Sbjct: 1   MDWQGQKLAEMLMQLLLVASAVAAFVVGYAMADFQLMLLVYAGGVVLTALVTVPNWPFFN 60

Query: 273 RNPLNWQNPRNTDEKP 320
           R+PL W +    D  P
Sbjct: 61  RHPLKWLDAAEADRHP 76


>03_05_0815 +
           27917516-27917767,27918024-27918110,27918281-27918394,
           27919644-27919835,27919925-27921677,27921771-27922708,
           27923587-27923859
          Length = 1202

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -1

Query: 145 VIIALYNFSAFACPT*SICVGMDEKKSI 62
           +++ L+N SA  C   S+C+GM   K++
Sbjct: 55  ILVLLFNLSAILCQYLSMCIGMVTGKNL 82


>05_04_0029 -
           17321378-17321905,17323348-17323525,17323531-17323910,
           17323936-17324052
          Length = 400

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +2

Query: 161 WFHLGLYCSTVFTICIYPWSWISTCCCPDR 250
           W  L L+ + V  IC Y  + I  C C DR
Sbjct: 42  WLSLALF-AMVGAICFYTGNLIDRCMCADR 70


>12_01_0197 + 1456296-1456668,1456930-1458746
          Length = 729

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 14/63 (22%), Positives = 24/63 (38%)
 Frame = -2

Query: 366 YLYKFFHFIFSLSCLSVSHRYFLDSASSMDFCDTWAMEARSGQQQVEIQLQGYIQIVKTV 187
           Y Y F    F +     +  +FL     M   + WA E          ++  Y ++VK  
Sbjct: 383 YFYGFIGVFFIVEVFFFAFAWFLVLRKEMWSSEVWAAEEGYRVMTSHFRMYSYRELVKAT 442

Query: 186 EQY 178
           E++
Sbjct: 443 ERF 445


>09_03_0215 +
           13524418-13524465,13524856-13525171,13525291-13525352,
           13526352-13527063,13527847-13527863
          Length = 384

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -3

Query: 356 SFSISFFPFLACRFLIGISWILPV 285
           +FSISFFP   C  L+ +  + P+
Sbjct: 360 AFSISFFPSRRCACLMALQGVTPI 383


>04_02_0007 +
           8464923-8465155,8466037-8466591,8466645-8467662,
           8467768-8468485,8468651-8468937
          Length = 936

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 2/71 (2%)
 Frame = +2

Query: 23  CGFCNSAFSLLNDNGFFFIH--TYTY*LCWTSKG*KIIQSDNHIIQYSWFHLGLYCSTVF 196
           C F N++   L  N   +    T ++ +C ++      +S+N        HL L CS +F
Sbjct: 550 CFFQNTSAVFLEGNKKLYSKSSTVSFPICGSTSD--STKSNNEASLTKKIHLPLQCSDLF 607

Query: 197 TICIYPWSWIS 229
             C Y  +W S
Sbjct: 608 KRCNYVLNWCS 618


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,839,348
Number of Sequences: 37544
Number of extensions: 215851
Number of successful extensions: 537
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 533
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 537
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 814473264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)