Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_G24
         (433 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF043693-5|AAB97532.1|  105|Caenorhabditis elegans Hypothetical ...    71   3e-13
CU457744-3|CAM36369.1|  247|Caenorhabditis elegans Hypothetical ...    30   0.82 
Z72512-5|CAA96667.2|  351|Caenorhabditis elegans Hypothetical pr...    27   4.4  
U41263-8|AAC24430.1|  455|Caenorhabditis elegans Hypothetical pr...    27   4.4  
AC024806-3|AAP13749.1|  363|Caenorhabditis elegans Serpentine re...    27   4.4  
Z68114-6|CAA92160.1|  316|Caenorhabditis elegans Hypothetical pr...    27   5.8  
U49956-4|AAK77620.1| 1117|Caenorhabditis elegans Variable abnorm...    27   7.7  
U49956-3|AAK77621.1| 1122|Caenorhabditis elegans Variable abnorm...    27   7.7  
AF040269-1|AAC38970.1| 1122|Caenorhabditis elegans Eph receptor ...    27   7.7  
AC024832-7|AAL27257.1|  389|Caenorhabditis elegans Hypothetical ...    27   7.7  
AC024832-6|AAL27256.1|  459|Caenorhabditis elegans Hypothetical ...    27   7.7  

>AF043693-5|AAB97532.1|  105|Caenorhabditis elegans Hypothetical
           protein C34B2.10 protein.
          Length = 105

 Score = 71.3 bits (167), Expect = 3e-13
 Identities = 31/80 (38%), Positives = 52/80 (65%), Gaps = 2/80 (2%)
 Frame = +3

Query: 81  IPTHIDYVGQAKAEKLYRAIITLFSIVGFIWGYIVQQFSQSVY-ILGAGFLLAAVLTVPP 257
           + +HID+ GQ  AE+ Y+ I+T+  I+GF+ G+  QQ S +++ +LGA    A ++ +PP
Sbjct: 15  LSSHIDFQGQKVAERTYQVILTIAGIIGFLVGFWTQQLSYAMFTVLGASAFTALII-LPP 73

Query: 258 WP-MYRRNPLNWQNPRNTDE 314
           WP ++R+NP+ W  P    E
Sbjct: 74  WPFLFRKNPIVWHTPAEPQE 93


>CU457744-3|CAM36369.1|  247|Caenorhabditis elegans Hypothetical
           protein T06A10.4 protein.
          Length = 247

 Score = 29.9 bits (64), Expect = 0.82
 Identities = 19/71 (26%), Positives = 29/71 (40%)
 Frame = +2

Query: 92  Y*LCWTSKG*KIIQSDNHIIQYSWFHLGLYCSTVFTICIYPWSWISTCCCPDRASMAHVS 271
           Y  C   K   +I+ +N   +Y WFH    C  + T     W   + C     A++A   
Sbjct: 177 YCWCQLDKNDTMIECENPGCKYGWFH--FTCIGMITAPAGDWYCTNECRAQGLAAVAEAP 234

Query: 272 QKSIELAESKK 304
           QK+ +    KK
Sbjct: 235 QKAPQRKGLKK 245


>Z72512-5|CAA96667.2|  351|Caenorhabditis elegans Hypothetical
           protein R07B5.7 protein.
          Length = 351

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = -3

Query: 431 FFFFF*NLQYVYLKIREIIFKTIYTSFSISFFPFLAC 321
           FF  +    Y    I+ I F T Y ++S   FPFL C
Sbjct: 104 FFTAYCATVYPNQYIKLIFFLTFYFNYSAMVFPFLLC 140


>U41263-8|AAC24430.1|  455|Caenorhabditis elegans Hypothetical
           protein T19D12.10 protein.
          Length = 455

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
 Frame = +3

Query: 147 LFSIVGFI---WGYIVQQFSQSVYILGAGFLLAAVLTVPPWPMYRRNPLNWQN 296
           LFS +G I   W  I +  S  +  L AGF L+ ++T+P   +   + L W++
Sbjct: 136 LFSSIGSISEGWSPIAE-ISTYIAFLSAGFQLSNIITMPLSGILCESSLGWRS 187


>AC024806-3|AAP13749.1|  363|Caenorhabditis elegans Serpentine
           receptor, class w protein40 protein.
          Length = 363

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -3

Query: 404 YVYLKIREIIFKTIYTSFSISFFPFLA 324
           ++YLK+R I F   + SF+I F  F A
Sbjct: 25  FIYLKVRCIRFYADFVSFTICFVGFFA 51


>Z68114-6|CAA92160.1|  316|Caenorhabditis elegans Hypothetical
           protein F17A2.9 protein.
          Length = 316

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 16/42 (38%), Positives = 24/42 (57%)
 Frame = +3

Query: 108 QAKAEKLYRAIITLFSIVGFIWGYIVQQFSQSVYILGAGFLL 233
           Q K  +L  AIIT  S++G++    +  F  +V I G+ FLL
Sbjct: 158 QKKFNEL-NAIITDHSVIGYVISGRISSFLLTVIIFGSVFLL 198


>U49956-4|AAK77620.1| 1117|Caenorhabditis elegans Variable abnormal
           morphology protein1, isoform a protein.
          Length = 1117

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 12/35 (34%), Positives = 15/35 (42%)
 Frame = +3

Query: 288 WQNPRNTDEKPTXXXXXXXXXXTCINSFKYYFSYF 392
           W+NP  TDEK              IN   + FS+F
Sbjct: 64  WRNPAATDEKHANQRAYVTCNYDMINPSNWLFSHF 98


>U49956-3|AAK77621.1| 1122|Caenorhabditis elegans Variable abnormal
           morphology protein1, isoform b protein.
          Length = 1122

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 12/35 (34%), Positives = 15/35 (42%)
 Frame = +3

Query: 288 WQNPRNTDEKPTXXXXXXXXXXTCINSFKYYFSYF 392
           W+NP  TDEK              IN   + FS+F
Sbjct: 64  WRNPAATDEKHANQRAYVTCNYDMINPSNWLFSHF 98


>AF040269-1|AAC38970.1| 1122|Caenorhabditis elegans Eph receptor
           tyrosine kinase protein.
          Length = 1122

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 12/35 (34%), Positives = 15/35 (42%)
 Frame = +3

Query: 288 WQNPRNTDEKPTXXXXXXXXXXTCINSFKYYFSYF 392
           W+NP  TDEK              IN   + FS+F
Sbjct: 64  WRNPAATDEKHANQRAYVTCNYDMINPSNWLFSHF 98


>AC024832-7|AAL27257.1|  389|Caenorhabditis elegans Hypothetical
           protein Y57E12AL.1b protein.
          Length = 389

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -2

Query: 366 YLYKFFHFIFSLSCLSV 316
           Y Y FFHF+F+L+ L V
Sbjct: 320 YSYSFFHFMFALASLYV 336


>AC024832-6|AAL27256.1|  459|Caenorhabditis elegans Hypothetical
           protein Y57E12AL.1a protein.
          Length = 459

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -2

Query: 366 YLYKFFHFIFSLSCLSV 316
           Y Y FFHF+F+L+ L V
Sbjct: 390 YSYSFFHFMFALASLYV 406


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,839,893
Number of Sequences: 27780
Number of extensions: 209140
Number of successful extensions: 692
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 673
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 691
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 724655464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)