Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_G23
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces pom...    26   3.0  
SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|c...    26   3.0  
SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces pomb...    26   3.9  
SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyc...    25   5.2  
SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomy...    25   6.8  
SPAC29A4.17c |||FUN14 family protein|Schizosaccharomyces pombe|c...    25   6.8  
SPBC4F6.16c |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces p...    25   6.8  
SPAC22H10.12c |gdi1|sec19|GDP dissociation inhibitor Gdi1 |Schiz...    25   9.0  
SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomy...    25   9.0  

>SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 772

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +3

Query: 177 SSEMRSSFSSYINTGNENVKTLRMSST 257
           +  +RSS S  ++T N N K L +SST
Sbjct: 314 NKNLRSSLSKLLSTSNLNNKPLSLSST 340


>SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 554

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
 Frame = +2

Query: 50  PPQLFGNDSTQNSKTKDSKLAPHVEPDMIADIVI-PSLLIAALFIGNAFIVLIIYKYR 220
           PP+L+    T++ K +D      V P  +AD  I PS     LF  N F    + K R
Sbjct: 6   PPRLYDMSPTESKKQEDVSETELVYPVELADATIQPSKSDDDLFDSNDFSKTYLAKSR 63


>SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 649

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = +1

Query: 22  KHVLKKRNSPSATVRERFDTEQQNKRFKTGSARRARHDCRYSD 150
           K   K+R  PS+  ++   T Q++K  K   AR+     + SD
Sbjct: 576 KKTNKRRELPSSLTKKNTRTPQRSKEVKKVPARKLSQSTKKSD 618


>SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 703

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -1

Query: 320 ELVTKPHFPHCGRFRS 273
           +L T PH PH GR +S
Sbjct: 227 DLCTGPHVPHTGRIKS 242


>SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 541

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
 Frame = +1

Query: 301 CGLVTSSYLFLASTGDYTPTIIYILITRYGNPHCIVLLAMEYLQ--NWMRIDRQKNVLFR 474
           C  V   ++ +AS  D    I+      Y  P C+V    + L+  NW+ +D + ++ +R
Sbjct: 87  CVSVFHKFVVIASERDLARKILNS--PSYVQP-CVVDAGKKILKHTNWVFLDGRDHIEYR 143

Query: 475 KGLS 486
           KGL+
Sbjct: 144 KGLN 147


>SPAC29A4.17c |||FUN14 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 147

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 5/43 (11%)
 Frame = -1

Query: 320 ELVTKPHFPHCGRFRSRS-----MEWC*THPQGLHIFVSCIYI 207
           E  T  HFP  GRF ++S       W  T+P     F S +Y+
Sbjct: 100 EQYTGFHFPSSGRFNTQSTFPTIRNWICTNPNFKLSFFSAMYV 142


>SPBC4F6.16c |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 467

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +1

Query: 64  RERFDTEQQNKRFKTGSARRARHDCRYSDSVALD 165
           RE+F  +++ KRFK    +  R   R  D V  D
Sbjct: 326 REQFFADEEAKRFKDSFRKHFRDISRIMDCVGCD 359


>SPAC22H10.12c |gdi1|sec19|GDP dissociation inhibitor Gdi1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 440

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +1

Query: 328 FLASTGDYTPTIIYILITRY 387
           FL + GD T  +IY  +TRY
Sbjct: 79  FLMANGDLTNILIYTDVTRY 98


>SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1010

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 14/43 (32%), Positives = 19/43 (44%)
 Frame = +1

Query: 52  SATVRERFDTEQQNKRFKTGSARRARHDCRYSDSVALDSGPVH 180
           S  ++ER +TEQQN      + R      R    + LD   VH
Sbjct: 483 SEKLKERLETEQQNMSGSFQATRLTAQLSRLDQRLDLDRSFVH 525


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,348,167
Number of Sequences: 5004
Number of extensions: 49049
Number of successful extensions: 160
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)