Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_G23
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1323 + 32644956-32645096,32645488-32646126,32646701-326469...    29   3.0  
12_01_0177 - 1312229-1312498,1314758-1315630,1315729-1315885,131...    28   5.2  
11_01_0176 - 1403284-1403553,1404313-1404468,1404569-1404787,140...    28   5.2  
09_02_0407 - 8635717-8636122,8636342-8636729,8637040-8637379           28   5.2  
04_04_1344 + 32787574-32787632,32788488-32789070,32789211-327894...    28   5.2  
03_06_0716 - 35695158-35696795,35697075-35697288,35697290-356973...    28   5.2  
01_01_0128 - 1167904-1168749,1168790-1168863,1169419-1169491,117...    28   5.2  

>04_04_1323 +
           32644956-32645096,32645488-32646126,32646701-32646907,
           32647020-32647100,32647686-32648566,32648641-32648932,
           32649657-32650673,32651334-32651605,32651992-32652493
          Length = 1343

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 25/69 (36%), Positives = 35/69 (50%), Gaps = 5/69 (7%)
 Frame = +2

Query: 95  KDSKLAPHVEP--DMIADIVIPSLL---IAALFIGNAFIVLIIYKYRKRKCEDLEDEFNT 259
           K+SK  P  EP  D IA  + PS+      ALF+G     L++    KRKC D +D+F  
Sbjct: 481 KNSKFPP-AEPFDDYIAKYLFPSISGNRNKALFLGYMVKCLLMAFTGKRKC-DNKDDFRN 538

Query: 260 IPLSVNGNV 286
             L + G +
Sbjct: 539 KRLDLAGEL 547


>12_01_0177 -
           1312229-1312498,1314758-1315630,1315729-1315885,
           1316207-1316247
          Length = 446

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +2

Query: 8   ARVVVNTCSRKETAPPQLFGNDSTQNSKTKDSKLAPHVE 124
           A V +N CS  + +  +LF   + QN  T    + PHVE
Sbjct: 308 ALVTLNECSNIKASTIRLFDEKTLQNILTGIPSVLPHVE 346


>11_01_0176 -
           1403284-1403553,1404313-1404468,1404569-1404787,
           1405198-1405440,1405539-1405695,1406186-1406226
          Length = 361

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +2

Query: 8   ARVVVNTCSRKETAPPQLFGNDSTQNSKTKDSKLAPHVE 124
           A V +N CS  + +  +LF   + QN  T    + PHVE
Sbjct: 171 ALVTLNECSNIKASTIRLFDEKTLQNILTGIPSVLPHVE 209


>09_02_0407 - 8635717-8636122,8636342-8636729,8637040-8637379
          Length = 377

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = +2

Query: 134 IADIVIPSLLIAALFIGNAFIVLIIYKYRKRKCEDLE 244
           I  IVI S+L+A   +    +VL+  K +  KCED E
Sbjct: 198 ILAIVILSVLVAMSVLVAVIVVLLCRKKKAGKCEDWE 234


>04_04_1344 +
           32787574-32787632,32788488-32789070,32789211-32789423,
           32789884-32790173,32791201-32791312,32791394-32791630,
           32791714-32792394
          Length = 724

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 13/57 (22%), Positives = 29/57 (50%)
 Frame = -3

Query: 291 LWTFPFTLNGMVLNSSSRSSHFRFLYLYMMRTMNAFPMNRAAIKSDGITISAIMSGS 121
           +W +  TL+G  + S+  +  +  L+ Y+ R +  FP+ +   ++ G+ I     G+
Sbjct: 217 VWRYLHTLDGPDVPSTKNALVWVVLFQYIPRLLRIFPVTKDLKRTAGVFIETAWLGA 273


>03_06_0716 -
           35695158-35696795,35697075-35697288,35697290-35697372,
           35697695-35697865
          Length = 701

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +3

Query: 171 PCSSEMRSSFSSYINTGNENVKTLRMSSTPFH 266
           P + +  + + +YIN+ NE ++     S PFH
Sbjct: 293 PLAKKCMAVYQTYINSMNERIRNQFAQSNPFH 324


>01_01_0128 - 1167904-1168749,1168790-1168863,1169419-1169491,
            1171148-1171398,1171442-1171687,1172220-1172415,
            1172796-1172876,1172966-1173169,1173671-1173880,
            1173953-1174174,1174437-1174480,1174974-1175052,
            1175066-1175227,1175337-1175564,1175786-1175815,
            1175905-1176273,1176356-1176571,1177202-1177683,
            1177930-1177975
          Length = 1352

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
 Frame = +1

Query: 10   ACRRKHVLKKRNSPSA--TVRERFDT--EQQNKRFKTGSARRARHDCRYSDSVALD 165
            A R K   K+R+S S+  T  + +D+  E++N+R K    R+ R     SDS A D
Sbjct: 1162 AKRHKRRSKRRSSDSSDDTDSDEYDSGSEEENRRKKRSHRRKHRRHSSRSDSDASD 1217


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,939,225
Number of Sequences: 37544
Number of extensions: 301867
Number of successful extensions: 812
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 797
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 812
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)