Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_G23
         (521 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC028156-1|AAH28156.1|  447|Homo sapiens chromosome 19 open read...    31   2.4  
AC004221-2|AAC04305.1|  725|Homo sapiens R29144_1 protein.             31   2.4  
L19711-1|AAA81779.1|  895|Homo sapiens dystroglycan protein.           30   4.3  
BC014616-1|AAH14616.1|  895|Homo sapiens dystroglycan 1 (dystrop...    30   4.3  
BC012740-1|AAH12740.1|  895|Homo sapiens dystroglycan 1 (dystrop...    30   4.3  
AF168787-1|AAF43103.1|  478|Homo sapiens CARKL protein.                29   7.5  
AF163573-1|AAF24936.1|  478|Homo sapiens CARKL protein.                29   7.5  
BX538183-1|CAD98055.1|  472|Homo sapiens hypothetical protein pr...    29   9.9  

>BC028156-1|AAH28156.1|  447|Homo sapiens chromosome 19 open reading
           frame 26 protein.
          Length = 447

 Score = 31.1 bits (67), Expect = 2.4
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = +2

Query: 113 PHVEPDMIADIVIPSLLIAALFIGNAFIVLIIYKYRKRKCEDLEDEFN 256
           P  EPD I D  +  +++ +LF+G   +VL       ++C D+    N
Sbjct: 28  PTAEPDPILDNYVLLVVVMSLFVGGTLVVLSGVLLLCKRCWDVHQRLN 75


>AC004221-2|AAC04305.1|  725|Homo sapiens R29144_1 protein.
          Length = 725

 Score = 31.1 bits (67), Expect = 2.4
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = +2

Query: 113 PHVEPDMIADIVIPSLLIAALFIGNAFIVLIIYKYRKRKCEDLEDEFN 256
           P  EPD I D  +  +++ +LF+G   +VL       ++C D+    N
Sbjct: 28  PTAEPDPILDNYVLLVVVMSLFVGGTLVVLSGVLLLCKRCWDVHQRLN 75


>L19711-1|AAA81779.1|  895|Homo sapiens dystroglycan protein.
          Length = 895

 Score = 30.3 bits (65), Expect = 4.3
 Identities = 15/51 (29%), Positives = 28/51 (54%)
 Frame = +2

Query: 122 EPDMIADIVIPSLLIAALFIGNAFIVLIIYKYRKRKCEDLEDEFNTIPLSV 274
           E D+    VIP++++AA+ +    I +I Y+ +++    LED+   I   V
Sbjct: 746 EDDVYLHTVIPAVVVAAILLIAGIIAMICYRKKRKGKLTLEDQATFIKKGV 796


>BC014616-1|AAH14616.1|  895|Homo sapiens dystroglycan 1
           (dystrophin-associated glycoprotein 1) protein.
          Length = 895

 Score = 30.3 bits (65), Expect = 4.3
 Identities = 15/51 (29%), Positives = 28/51 (54%)
 Frame = +2

Query: 122 EPDMIADIVIPSLLIAALFIGNAFIVLIIYKYRKRKCEDLEDEFNTIPLSV 274
           E D+    VIP++++AA+ +    I +I Y+ +++    LED+   I   V
Sbjct: 746 EDDVYLHTVIPAVVVAAILLIAGIIAMICYRKKRKGKLTLEDQATFIKKGV 796


>BC012740-1|AAH12740.1|  895|Homo sapiens dystroglycan 1
           (dystrophin-associated glycoprotein 1) protein.
          Length = 895

 Score = 30.3 bits (65), Expect = 4.3
 Identities = 15/51 (29%), Positives = 28/51 (54%)
 Frame = +2

Query: 122 EPDMIADIVIPSLLIAALFIGNAFIVLIIYKYRKRKCEDLEDEFNTIPLSV 274
           E D+    VIP++++AA+ +    I +I Y+ +++    LED+   I   V
Sbjct: 746 EDDVYLHTVIPAVVVAAILLIAGIIAMICYRKKRKGKLTLEDQATFIKKGV 796


>AF168787-1|AAF43103.1|  478|Homo sapiens CARKL protein.
          Length = 478

 Score = 29.5 bits (63), Expect = 7.5
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = +3

Query: 168 RPCSSEMRSSFSSYINTGNE--NVKTLRMSSTPFH 266
           RP  S+  ++   Y NT ++  NVKTLR S  P H
Sbjct: 191 RPLMSDQNAASWGYFNTQSQSWNVKTLRSSGFPVH 225


>AF163573-1|AAF24936.1|  478|Homo sapiens CARKL protein.
          Length = 478

 Score = 29.5 bits (63), Expect = 7.5
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = +3

Query: 168 RPCSSEMRSSFSSYINTGNE--NVKTLRMSSTPFH 266
           RP  S+  ++   Y NT ++  NVKTLR S  P H
Sbjct: 191 RPLMSDQNAASWGYFNTQSQSWNVKTLRSSGFPVH 225


>BX538183-1|CAD98055.1|  472|Homo sapiens hypothetical protein
           protein.
          Length = 472

 Score = 29.1 bits (62), Expect = 9.9
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +1

Query: 250 VQHHSIERERKRPQCGKCGLVTSSYLFLA 336
           V+H  I    K  +C KCG V SS  +LA
Sbjct: 291 VRHQKIHTREKPHKCNKCGKVYSSSSYLA 319


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 79,097,069
Number of Sequences: 237096
Number of extensions: 1670883
Number of successful extensions: 4954
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4952
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4990119376
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)