Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_G23
(521 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U04712-2|AAA81902.1| 565|Caenorhabditis elegans unc-87 protein. 34 0.054
AF106590-6|AAT68897.1| 544|Caenorhabditis elegans Uncoordinated... 34 0.054
AF106590-5|AAC78234.1| 565|Caenorhabditis elegans Uncoordinated... 34 0.054
Z81134-8|CAB57908.1| 366|Caenorhabditis elegans Hypothetical pr... 30 1.2
AL117202-33|CAB55097.1| 366|Caenorhabditis elegans Hypothetical... 30 1.2
U41557-9|AAA83309.1| 479|Caenorhabditis elegans Hypothetical pr... 29 1.5
U29381-13|ABI54348.1| 1898|Caenorhabditis elegans Hypothetical p... 29 2.0
U29381-12|AAM98022.3| 1671|Caenorhabditis elegans Hypothetical p... 29 2.0
U29381-11|ABI54347.1| 1911|Caenorhabditis elegans Hypothetical p... 29 2.0
AF003389-3|AAC71136.1| 1003|Caenorhabditis elegans Hypothetical ... 28 3.5
AC024755-3|AAL65801.1| 231|Caenorhabditis elegans Hypothetical ... 28 3.5
U23139-1|AAK31493.2| 513|Caenorhabditis elegans Hypothetical pr... 28 4.7
Z81015-5|CAB02661.1| 342|Caenorhabditis elegans Hypothetical pr... 27 8.1
U00036-12|AAK29854.2| 237|Caenorhabditis elegans Hypothetical p... 27 8.1
AF143152-1|AAD37863.1| 237|Caenorhabditis elegans putative NADH... 27 8.1
>U04712-2|AAA81902.1| 565|Caenorhabditis elegans unc-87 protein.
Length = 565
Score = 34.3 bits (75), Expect = 0.054
Identities = 16/51 (31%), Positives = 26/51 (50%)
Frame = +2
Query: 11 RVVVNTCSRKETAPPQLFGNDSTQNSKTKDSKLAPHVEPDMIADIVIPSLL 163
R+ NT SR+ P Q G + T NS ++ K PHV+ ++P+ +
Sbjct: 58 RLRPNTASRERNIPIQFTGKNPTTNSALEEYKPVPHVQVTSPKSSIVPNFV 108
>AF106590-6|AAT68897.1| 544|Caenorhabditis elegans Uncoordinated
protein 87, isoform c protein.
Length = 544
Score = 34.3 bits (75), Expect = 0.054
Identities = 16/51 (31%), Positives = 26/51 (50%)
Frame = +2
Query: 11 RVVVNTCSRKETAPPQLFGNDSTQNSKTKDSKLAPHVEPDMIADIVIPSLL 163
R+ NT SR+ P Q G + T NS ++ K PHV+ ++P+ +
Sbjct: 37 RLRPNTASRERNIPIQFTGKNPTTNSALEEYKPVPHVQVTSPKSSIVPNFV 87
>AF106590-5|AAC78234.1| 565|Caenorhabditis elegans Uncoordinated
protein 87, isoform a protein.
Length = 565
Score = 34.3 bits (75), Expect = 0.054
Identities = 16/51 (31%), Positives = 26/51 (50%)
Frame = +2
Query: 11 RVVVNTCSRKETAPPQLFGNDSTQNSKTKDSKLAPHVEPDMIADIVIPSLL 163
R+ NT SR+ P Q G + T NS ++ K PHV+ ++P+ +
Sbjct: 58 RLRPNTASRERNIPIQFTGKNPTTNSALEEYKPVPHVQVTSPKSSIVPNFV 108
>Z81134-8|CAB57908.1| 366|Caenorhabditis elegans Hypothetical
protein T28D6.6 protein.
Length = 366
Score = 29.9 bits (64), Expect = 1.2
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = -2
Query: 304 RISRTVDVSVHAQWNGVELILKVFTFSFPVFIYDENDERISD 179
RI TV +S H +WN +L+ KV+ + + IY + ++ D
Sbjct: 261 RIPHTVPISAHHKWNFDDLLEKVWEYLNLIRIYTKPKGQLPD 302
>AL117202-33|CAB55097.1| 366|Caenorhabditis elegans Hypothetical
protein T28D6.6 protein.
Length = 366
Score = 29.9 bits (64), Expect = 1.2
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = -2
Query: 304 RISRTVDVSVHAQWNGVELILKVFTFSFPVFIYDENDERISD 179
RI TV +S H +WN +L+ KV+ + + IY + ++ D
Sbjct: 261 RIPHTVPISAHHKWNFDDLLEKVWEYLNLIRIYTKPKGQLPD 302
>U41557-9|AAA83309.1| 479|Caenorhabditis elegans Hypothetical
protein C50F7.10 protein.
Length = 479
Score = 29.5 bits (63), Expect = 1.5
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = -2
Query: 286 DVSVHAQWNGVELILKVFTFSFPVFIYDENDERISDEQGRYQER 155
D+ + + NG+E I+ +F F P+ IYD ++ E + E+
Sbjct: 105 DICLLLRDNGIEPIVTLFHFDMPLSIYDNGTSWLNKENCEHFEK 148
>U29381-13|ABI54348.1| 1898|Caenorhabditis elegans Hypothetical
protein F35D11.11c protein.
Length = 1898
Score = 29.1 bits (62), Expect = 2.0
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +1
Query: 259 HSIERERKRPQCGKCGLVTSSYLFLASTGDYTPTI 363
H+IER R Q + ++ YL TGD TP I
Sbjct: 1840 HTIERHRSLSQSSERTILQERYLEYVYTGDRTPAI 1874
>U29381-12|AAM98022.3| 1671|Caenorhabditis elegans Hypothetical
protein F35D11.11d protein.
Length = 1671
Score = 29.1 bits (62), Expect = 2.0
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +1
Query: 259 HSIERERKRPQCGKCGLVTSSYLFLASTGDYTPTI 363
H+IER R Q + ++ YL TGD TP I
Sbjct: 1600 HTIERHRSLSQSSERTILQERYLEYVYTGDRTPAI 1634
>U29381-11|ABI54347.1| 1911|Caenorhabditis elegans Hypothetical
protein F35D11.11b protein.
Length = 1911
Score = 29.1 bits (62), Expect = 2.0
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +1
Query: 259 HSIERERKRPQCGKCGLVTSSYLFLASTGDYTPTI 363
H+IER R Q + ++ YL TGD TP I
Sbjct: 1840 HTIERHRSLSQSSERTILQERYLEYVYTGDRTPAI 1874
>AF003389-3|AAC71136.1| 1003|Caenorhabditis elegans Hypothetical
protein F23H11.4a protein.
Length = 1003
Score = 28.3 bits (60), Expect = 3.5
Identities = 24/64 (37%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Frame = -2
Query: 301 ISRTVDVSVHAQWN--GVELILKVFTFSFPVFIYDENDERISDEQGRYQERRNHYICNHV 128
I +VS HAQ N VE + KVF S +F+ D DE++ E Y + N I
Sbjct: 702 IGHLKNVSEHAQENRASVENLAKVFAAS--LFLTDAMDEKVFSES--YNHQINVLIHLTT 757
Query: 127 GLDV 116
G DV
Sbjct: 758 GYDV 761
>AC024755-3|AAL65801.1| 231|Caenorhabditis elegans Hypothetical
protein Y34B4A.6 protein.
Length = 231
Score = 28.3 bits (60), Expect = 3.5
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +3
Query: 405 STSSYGISTKLDAY*SSKKCFVPKRFVYQMVDN 503
+ +YG+ T DA+ K+C+ PK Y N
Sbjct: 68 NNQAYGLLTTCDAFKQYKQCYQPKEQFYACAQN 100
>U23139-1|AAK31493.2| 513|Caenorhabditis elegans Hypothetical
protein F13H8.5 protein.
Length = 513
Score = 27.9 bits (59), Expect = 4.7
Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Frame = -1
Query: 176 TGPLS--RATESLYLQSCRARRAEPVLNLLFCCSVSNRSRTVAEGLFLFLSTCLRRH 12
T P++ R + +LQ C+ R+ + CS S+ V G+FL C + H
Sbjct: 384 TAPVAKPRTASAKFLQCCKGRKVHNSCERI--CSFDVLSKKVLTGMFLGTDACPQHH 438
>Z81015-5|CAB02661.1| 342|Caenorhabditis elegans Hypothetical
protein C11E4.7 protein.
Length = 342
Score = 27.1 bits (57), Expect = 8.1
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +3
Query: 405 STSSYGISTKLDAY*SSKKCFVPKRFVYQMVDNLSTFK 518
S SS +TK+ + SS CF+P F +Q+ +N K
Sbjct: 66 SISSLNTATKITPHISSSSCFLPS-FSHQVEENFQKRK 102
>U00036-12|AAK29854.2| 237|Caenorhabditis elegans Hypothetical
protein R151.6 protein.
Length = 237
Score = 27.1 bits (57), Expect = 8.1
Identities = 7/28 (25%), Positives = 19/28 (67%)
Frame = +2
Query: 143 IVIPSLLIAALFIGNAFIVLIIYKYRKR 226
+++ + + LF+G AF ++++Y + +R
Sbjct: 106 MILSGIFVQILFLGQAFTIMLVYIWSRR 133
>AF143152-1|AAD37863.1| 237|Caenorhabditis elegans putative NADH
oxidoreductase complexI subunit protein.
Length = 237
Score = 27.1 bits (57), Expect = 8.1
Identities = 7/28 (25%), Positives = 19/28 (67%)
Frame = +2
Query: 143 IVIPSLLIAALFIGNAFIVLIIYKYRKR 226
+++ + + LF+G AF ++++Y + +R
Sbjct: 106 MILSGIFVQILFLGQAFTIMLVYIWSRR 133
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,180,328
Number of Sequences: 27780
Number of extensions: 280112
Number of successful extensions: 852
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 809
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 852
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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