Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_G22
(555 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 302 2e-83
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 169 3e-43
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 153 2e-38
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 118 6e-28
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 93 2e-20
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 86 3e-18
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 83 4e-17
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 44 2e-05
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 35 0.009
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 31 0.086
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 31 0.11
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 1.4
SPBC18H10.06c |swd2|swd2.1|COMPASS complex subunit Swd2|Schizosa... 27 2.5
SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces p... 25 5.7
SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomy... 25 5.7
SPAC2E1P3.04 |||copper amine oxidase |Schizosaccharomyces pombe|... 25 7.5
SPAC16C9.03 |||export adaptor|Schizosaccharomyces pombe|chr 1|||... 25 7.5
SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma... 25 7.5
SPBC1683.09c |frp1||ferric-chelate reductase Frp1|Schizosaccharo... 25 7.5
SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 9.9
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 302 bits (742), Expect = 2e-83
Identities = 137/149 (91%), Positives = 143/149 (95%)
Frame = +2
Query: 107 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 286
+EE+AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+MVGMGQKDSYVGDEAQSK
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDSYVGDEAQSK 61
Query: 287 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLKPKANREKMTQ 466
RGILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVAPEEHP LLTEAPL PK+NREKMTQ
Sbjct: 62 RGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLTEAPLNPKSNREKMTQ 121
Query: 467 IMFETFNTPAMYVAIQAVLSLYASGRTTG 553
I+FETFN PA YVAIQAVLSLYASGRTTG
Sbjct: 122 IIFETFNAPAFYVAIQAVLSLYASGRTTG 150
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 169 bits (410), Expect = 3e-43
Identities = 76/144 (52%), Positives = 103/144 (71%), Gaps = 1/144 (0%)
Frame = +2
Query: 125 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTL 304
+ +DNGSG KAGFAGDD P+ +FP+ VGR +H+ VM QKD +VG EAQ+ RG+L +
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDMFVGSEAQNLRGLLKI 71
Query: 305 KYPIEHGIVTNWDDMEKIWHHTFYN-ELRVAPEEHPVLLTEAPLKPKANREKMTQIMFET 481
+ PIE GI+ NW DME+IW + + + +L PEEHP+LLTE PL N+EK+ + +ET
Sbjct: 72 QRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTEPPLANIRNKEKIAEYFYET 131
Query: 482 FNTPAMYVAIQAVLSLYASGRTTG 553
N PA+ ++Q VL+LYAS RTTG
Sbjct: 132 LNVPALSFSLQPVLALYASARTTG 155
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 153 bits (370), Expect = 2e-38
Identities = 72/149 (48%), Positives = 104/149 (69%), Gaps = 2/149 (1%)
Frame = +2
Query: 113 EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEAQSK 286
E A +V+DNG+G K G+A D+ PR FPSIVGRP R + + KD VGDEA++
Sbjct: 2 ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRPILRAEEKTGNVQIKDVMVGDEAEAV 61
Query: 287 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLKPKANREKMTQ 466
R +L +KYP+E+GI+ ++++M ++W +TF+ +L++ P +LLTE P+ P ANREKM +
Sbjct: 62 RSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKILLTEPPMNPVANREKMCE 121
Query: 467 IMFETFNTPAMYVAIQAVLSLYASGRTTG 553
MFE + +YVAIQAVLSLYA G ++G
Sbjct: 122 TMFERYGFGGVYVAIQAVLSLYAQGLSSG 150
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 118 bits (284), Expect = 6e-28
Identities = 65/162 (40%), Positives = 90/162 (55%), Gaps = 24/162 (14%)
Frame = +2
Query: 125 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG---------MGQK-------- 253
+++DNG+G K G+AG+DAP VFP+++ R G G M K
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVIAT-RSAGASSGPAVSSKPSYMASKGSGHLSSK 66
Query: 254 ------DSYVGDEAQSKRGI-LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPV 412
D ++G++A K +L YPI HG + NWD ME+ W + + LR PE+H
Sbjct: 67 RATEDLDFFIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYF 126
Query: 413 LLTEAPLKPKANREKMTQIMFETFNTPAMYVAIQAVLSLYAS 538
LLTE PL P NRE +IMFE+FN +Y+A+QAVL+L AS
Sbjct: 127 LLTEPPLNPPENRENTAEIMFESFNCAGLYIAVQAVLALAAS 168
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 93.1 bits (221), Expect = 2e-20
Identities = 52/147 (35%), Positives = 79/147 (53%)
Frame = +2
Query: 110 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 289
+EV+A+V+D GS + GF+G+D P+ V PS G + G + Y+ +S
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCGEFSDGRRLFG----EEYI---YKSNP 61
Query: 290 GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLKPKANREKMTQI 469
G + +K I +G V NWD +W + +L+ P EHP+L+TE P NR K +
Sbjct: 62 G-MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVKTLET 120
Query: 470 MFETFNTPAMYVAIQAVLSLYASGRTT 550
MFE+ PA Y+A Q + +ASG+ T
Sbjct: 121 MFESLRCPATYLAKQETCAAFASGKGT 147
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 86.2 bits (204), Expect = 3e-18
Identities = 44/137 (32%), Positives = 78/137 (56%), Gaps = 1/137 (0%)
Frame = +2
Query: 125 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTL 304
LV+DNGS +AG+ G+ P+ VF ++V R R + + + + VG++ + G ++
Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYRDRK----LSRTSTLVGNDTLIEVGSRSI 82
Query: 305 -KYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLKPKANREKMTQIMFET 481
+ P E +++NWD ME++ +TF +L + EHP+ +TE P R MT+++FE
Sbjct: 83 ARSPFERNVISNWDLMEQVLDYTFL-KLGIDRMEHPICMTEPLANPTYVRSTMTELLFEL 141
Query: 482 FNTPAMYVAIQAVLSLY 532
+N P++ I + S Y
Sbjct: 142 YNAPSVAYGIDGLFSFY 158
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 82.6 bits (195), Expect = 4e-17
Identities = 44/149 (29%), Positives = 81/149 (54%), Gaps = 2/149 (1%)
Frame = +2
Query: 110 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 289
EE+ +LV+D GS + G+AG+++P + PS + GV + ++ YV DE Q
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPS------YYGVRSDVTGRNKYVVDELQIHA 61
Query: 290 GI--LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLKPKANREKMT 463
I + +K +GI+ +W+ W +L+V P E+ +++TE P++ R+++
Sbjct: 62 PIPGMEVKNGKSNGIIQDWESTLYTWERGLKEKLQVNPTEYAMMITEPSWNPQSVRQQIM 121
Query: 464 QIMFETFNTPAMYVAIQAVLSLYASGRTT 550
+ FE + PA Y+ QAV +A+ ++T
Sbjct: 122 EAAFEQLHVPAFYLTKQAVCVAFANSKST 150
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 43.6 bits (98), Expect = 2e-05
Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 4/81 (4%)
Frame = +2
Query: 311 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEE----HPVLLTEAPLKPKANREKMTQIMFE 478
PI+ G V +W+ ++ W H Y+ L P + +PV L +RE TQ FE
Sbjct: 113 PIQRGRVVDWEALKAFWKH-LYSLLLKDPNDTTFRYPVCLVIPTYWSLYDRELATQFFFE 171
Query: 479 TFNTPAMYVAIQAVLSLYASG 541
P +A + ++ LYA G
Sbjct: 172 ECQVPGFTIAYEPLMGLYAIG 192
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 34.7 bits (76), Expect = 0.009
Identities = 35/146 (23%), Positives = 60/146 (41%), Gaps = 4/146 (2%)
Frame = +2
Query: 125 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTL 304
+V+DNG+ KAGFAG P+ + R + G + ++G+E + TL
Sbjct: 8 IVLDNGAYHIKAGFAGGKV--VEIPNCLTRSKD-------GNR-LFLGNELANCNDFTTL 57
Query: 305 KYPIEH--GIVTNWDDMEKIWHHTFYNELRVAPE--EHPVLLTEAPLKPKANREKMTQIM 472
++ H G + +W +W N + P ++ +LLT+ + Q++
Sbjct: 58 QFRRAHEKGYLVHWSTETAVWDLVMRNVGVMEPSMADYSLLLTQPVFTMPSIEHNTIQLV 117
Query: 473 FETFNTPAMYVAIQAVLSLYASGRTT 550
FE F A A L + G T
Sbjct: 118 FEEFQFDAYLPCTPAELIPWDHGSFT 143
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 31.5 bits (68), Expect = 0.086
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 5/53 (9%)
Frame = +2
Query: 371 FYNELRVAPEEHPVLLTE--APLKPKANREKMTQIMFETFNTPAM---YVAIQ 514
+Y L E+HP+LLT+ A L P+ + ++ +I ++ NTP + VAIQ
Sbjct: 1399 YYRALNFYLEQHPMLLTDLLAALTPRIDHPRVIRIFEKSENTPLILNFMVAIQ 1451
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 31.1 bits (67), Expect = 0.11
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +2
Query: 170 GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYP 313
G+ PRA F ++ P H G+++ M KD G+E S +G + + P
Sbjct: 502 GNQNPRATFVPLLCLPEHGGMVISM--KDWIGGEEFMSPKGFKSPRTP 547
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 27.5 bits (58), Expect = 1.4
Identities = 19/55 (34%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Frame = -1
Query: 267 PT*ESF*PM-PTMTPW*RGRPTIEGNTARGASSPAKPALHIPDPLSTTNAATSSS 106
PT S P+ PT+ P P N S P PL+TTN TS+S
Sbjct: 401 PTGNSTTPVTPTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTS 455
>SPBC18H10.06c |swd2|swd2.1|COMPASS complex subunit
Swd2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 357
Score = 26.6 bits (56), Expect = 2.5
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +1
Query: 418 HRSSPQAQSQQREDDTDYVRDLQHTRHVRSYPGRALTV 531
H S+ + +ED+T D+ R++R +PG TV
Sbjct: 78 HHSNSLIHASTKEDNTVRYLDVVTNRYLRYFPGHKQTV 115
>SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 25.4 bits (53), Expect = 5.7
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +2
Query: 413 LLTEAPLKPKANREKMTQIMFETFN 487
+L APL + +KM +++FET+N
Sbjct: 181 VLETAPLHAEEVSKKMKELLFETYN 205
>SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 874
Score = 25.4 bits (53), Expect = 5.7
Identities = 11/31 (35%), Positives = 14/31 (45%)
Frame = +3
Query: 117 LPRWS*TMGPECAKPVSRETTLPAPYFPRSW 209
L W T P+C P +RET + SW
Sbjct: 481 LETWMKTTCPKCHGPATRETDTMDTFVDSSW 511
>SPAC2E1P3.04 |||copper amine oxidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 712
Score = 25.0 bits (52), Expect = 7.5
Identities = 11/37 (29%), Positives = 18/37 (48%)
Frame = +1
Query: 292 YPHTQIPHRTRHRHQLGRYGEDLASHLLQ*AACSSRG 402
Y + + PH+ +H LG YG ++ L C +G
Sbjct: 307 YGNPEHPHQRKHAFDLGEYGAGYLTNPLA-LGCDCKG 342
>SPAC16C9.03 |||export adaptor|Schizosaccharomyces pombe|chr
1|||Manual
Length = 498
Score = 25.0 bits (52), Expect = 7.5
Identities = 9/20 (45%), Positives = 10/20 (50%)
Frame = -2
Query: 407 GAPRELHAAHCRRCDARSSP 348
G PRE HCR C+ P
Sbjct: 52 GIPRESTVNHCRECERYMQP 71
>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 630
Score = 25.0 bits (52), Expect = 7.5
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = -1
Query: 555 IPVVRPDAYSESTAWIATYMAGVLKVSNIICVIFS 451
+ +V D S+S Y+A +K +N+IC+++S
Sbjct: 51 VSLVLVDTQSDSNE--REYLAAEIKKANVICLVYS 83
>SPBC1683.09c |frp1||ferric-chelate reductase
Frp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 564
Score = 25.0 bits (52), Expect = 7.5
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +2
Query: 230 VMVGMGQKDSYVGDEAQSKRGILTLKYPI 316
+M+G +Y+G AQ KR +LT + I
Sbjct: 165 IMIGAIHGFAYIGLAAQGKRALLTARVTI 193
>SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 485
Score = 24.6 bits (51), Expect = 9.9
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 5/56 (8%)
Frame = +2
Query: 137 NGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMG-----QKDSYVGDEAQSKR 289
N +GM + R F S VG + VG Q+DSY+ D++ S+R
Sbjct: 318 NATGMYGVSKGHSSSTRRPFFSDVGSSQPAEEFVGSSSSHGRQQDSYIADDSDSER 373
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,293,559
Number of Sequences: 5004
Number of extensions: 48522
Number of successful extensions: 153
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 231978230
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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