Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_G19
(569 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC16C4.03 |pin1||peptidyl-prolyl cis-trans isomerase Pin1|Schi... 120 2e-28
SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomy... 37 0.002
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 30 0.21
SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein Usp104|Schi... 30 0.21
SPAC1805.15c |pub2||ubiquitin-protein ligase Pub2|Schizosaccharo... 30 0.27
SPAC328.03 |tps1||alpha,alpha-trehalose-phosphate synthase [UDP-... 27 1.9
SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom... 26 3.4
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 26 4.5
SPCC126.07c |||human CTD-binding SR-like protein rA9 homolog|Sch... 26 4.5
SPBC1604.04 |||thiamine pyrophosphate transporter|Schizosaccharo... 26 4.5
SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18 |Sch... 25 5.9
SPBC4F6.09 |str1||siderophore-iron transporter Str1 |Schizosacch... 25 7.8
>SPCC16C4.03 |pin1||peptidyl-prolyl cis-trans isomerase
Pin1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 175
Score = 120 bits (288), Expect = 2e-28
Identities = 68/168 (40%), Positives = 98/168 (58%), Gaps = 13/168 (7%)
Frame = +3
Query: 84 LPEGWQARKSRSTGMTYYLNKYTKQSQWEKPGSP--AAV-----NEDEDN------SSSK 224
LP+ W + SRS Y+ N T +S WE P + AA+ NE +++ S+S
Sbjct: 6 LPKPWIVKISRSRNRPYFFNTETHESLWEPPAATDMAALKKFIANELQESVTPTEASNSP 65
Query: 225 EVQCSHILVKHKXXXXXXXXXXXXITRTKEEAIQIIKGYRTEIVNREVGFDEVARLYSDC 404
+++ SH+LVKH+ ITR+KEEA ++ + Y + + V ++A SDC
Sbjct: 66 KIRASHLLVKHRESRRPSSWKEEHITRSKEEARKLAEHYEQLLKSGSVSMHDLAMKESDC 125
Query: 405 SSAKRDGDLGRFKKGQMQKPFEDVAFTLKIGQLSQLVETQSGVHIILR 548
SSA+R G+LG F + +MQKPFED AF LK G++S +VET SG HII R
Sbjct: 126 SSARRGGELGEFGRDEMQKPFEDAAFALKPGEISGVVETSSGFHIIQR 173
>SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 786
Score = 36.7 bits (81), Expect = 0.002
Identities = 18/52 (34%), Positives = 29/52 (55%)
Frame = +3
Query: 72 QEDSLPEGWQARKSRSTGMTYYLNKYTKQSQWEKPGSPAAVNEDEDNSSSKE 227
Q LP GW+ R++ S G TYY++ T+ + W +P S + N + SS +
Sbjct: 234 QYGRLPPGWE-RRADSLGRTYYVDHNTRTTTWTRPAS--STNPVHNTSSDSQ 282
Score = 36.3 bits (80), Expect = 0.003
Identities = 14/40 (35%), Positives = 26/40 (65%)
Frame = +3
Query: 84 LPEGWQARKSRSTGMTYYLNKYTKQSQWEKPGSPAAVNED 203
LP GW+ R + S + Y+++ TK + W+ P P+A+++D
Sbjct: 366 LPSGWEMRLTNSARV-YFVDHNTKTTTWDDPRLPSALDQD 404
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 30.3 bits (65), Expect = 0.21
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Frame = +3
Query: 78 DSLPEGWQARKSRSTGMTYYLNKYTK--QSQWEKP 176
+ LP GW A+ G +Y+N+ + Q QWE P
Sbjct: 8 EGLPSGWVAQWDAEYGTYFYVNESAQNPQPQWEPP 42
>SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein
Usp104|Schizosaccharomyces pombe|chr 1|||Manual
Length = 695
Score = 30.3 bits (65), Expect = 0.21
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +3
Query: 63 AAAQEDSLPEGWQARKSRSTGMTYYLNKYTKQSQWEKP 176
+AA ++ W K+ + + YY N T++S WEKP
Sbjct: 25 SAAPSKTVASDWHEVKTEDSRV-YYYNSVTRKSVWEKP 61
>SPAC1805.15c |pub2||ubiquitin-protein ligase
Pub2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 671
Score = 29.9 bits (64), Expect = 0.27
Identities = 14/56 (25%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = +3
Query: 57 EMAAAQEDSLPEGWQARKSRSTGMTYYLNKYTKQSQWEKPGSPAAVNED-EDNSSS 221
+ A ++ LP GW+ R S + Y+++ TK + W P ++ +N+ S
Sbjct: 235 QQVAVEKGPLPAGWEMRLSEDYHV-YFVDHSTKTTTWSDPRDNVVASDSVSENTDS 289
>SPAC328.03 |tps1||alpha,alpha-trehalose-phosphate synthase
[UDP-forming]|Schizosaccharomyces pombe|chr 1|||Manual
Length = 513
Score = 27.1 bits (57), Expect = 1.9
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = +3
Query: 27 TILLNDPRKSEMAAAQEDSLPEGWQARKSRSTGMTYYLNKYTKQ 158
+I++N E+A + D+L + R++ + Y+NKYT Q
Sbjct: 428 SIVINPWNTEELANSIHDALTMPEKQREANENKLFRYVNKYTSQ 471
>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 204
Score = 26.2 bits (55), Expect = 3.4
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Frame = +3
Query: 60 MAAAQEDSLPEGWQARKSRSTGMTYYLNKYTKQS--QWEKP 176
MA + LP GW A+ +Y+N+ ++ QWE P
Sbjct: 1 MAYQTREGLPNGWVAQWDERYKCYFYVNESDPKAKPQWECP 41
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 25.8 bits (54), Expect = 4.5
Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Frame = +3
Query: 342 RTEIVNREVGFDE--VARLYSDCSSAKRDGDLGRFKKGQM 455
R + + E+ FDE V ++ + AKR+ L +F+KG++
Sbjct: 300 RAKALYTELLFDEIHVGVIHGELPQAKREEALAKFRKGEI 339
>SPCC126.07c |||human CTD-binding SR-like protein rA9
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 571
Score = 25.8 bits (54), Expect = 4.5
Identities = 13/62 (20%), Positives = 24/62 (38%), Gaps = 3/62 (4%)
Frame = +3
Query: 162 QWEKPGSPAAVNEDEDNSSSKEVQCSHILVKHKXXXXXXXXXXXXITRT---KEEAIQII 332
QW+ PA+++ D ++ C H H + RT K + ++ +
Sbjct: 32 QWDSSSVPASISSTLDGLRIAKIPCGHYFHNHCLESWCRVANTCPLCRTEFLKVDVLEFV 91
Query: 333 KG 338
KG
Sbjct: 92 KG 93
>SPBC1604.04 |||thiamine pyrophosphate
transporter|Schizosaccharomyces pombe|chr 2|||Manual
Length = 314
Score = 25.8 bits (54), Expect = 4.5
Identities = 14/44 (31%), Positives = 20/44 (45%)
Frame = -1
Query: 311 LSASDFLFTPGRWSAAFFVLHKYVAALHLLR*AIVLIFINSCRA 180
LS S PGR+ + H Y + ++LL L+ S RA
Sbjct: 250 LSVSMLKVAPGRYECLWLSCHFYYSIIYLLNSMFYLLTFYSLRA 293
>SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1316
Score = 25.4 bits (53), Expect = 5.9
Identities = 11/37 (29%), Positives = 19/37 (51%)
Frame = -2
Query: 526 D*VSTSWLS*PIFSVKATSSNGFCICPFLKRPKSPSR 416
D +S+ +L P+ S K + PF ++P +P R
Sbjct: 794 DSISSKYLESPVDSQKVNRTPNLQSVPFFRQPDAPKR 830
>SPBC4F6.09 |str1||siderophore-iron transporter Str1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 612
Score = 25.0 bits (52), Expect = 7.8
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = -1
Query: 314 LLSASDFLFTPGRWSAAFFVLHKYVAALHLLR*AIVLIFINS 189
LLS S + G+WS A F++ + L L+ + IF+ S
Sbjct: 313 LLSISLASYDTGKWSDAKFIVMIIIGGLCLIAFVLYEIFVAS 354
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,339,216
Number of Sequences: 5004
Number of extensions: 45234
Number of successful extensions: 139
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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