Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_G18
         (555 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0651 + 30644241-30644615,30644751-30644858                       33   0.15 
06_01_1033 - 8080179-8080685                                           32   0.27 
03_01_0451 + 3461229-3461561,3462043-3462290,3462425-3462716,346...    31   0.62 
01_06_0677 - 31104736-31104897,31105046-31105234,31105313-311054...    29   3.3  
08_02_0444 - 17209447-17209491,17210559-17210849,17211655-172116...    28   4.4  
06_01_0240 - 1822086-1822216,1822311-1822367,1822788-1822842,182...    28   5.8  
04_03_1017 + 21747044-21748051                                         28   5.8  
11_06_0207 + 21214631-21216121                                         27   7.6  

>02_05_0651 + 30644241-30644615,30644751-30644858
          Length = 160

 Score = 33.1 bits (72), Expect = 0.15
 Identities = 27/84 (32%), Positives = 36/84 (42%), Gaps = 2/84 (2%)
 Frame = +3

Query: 285 MVKEKPNSIRIYDEEGFRRRAACIC--VRSDAESEVLLVTSSRRPDNWIXXXXXXXXXXX 458
           +V  +   ++ Y   G R    CI   VRS  E EVL++TS ++    +           
Sbjct: 4   LVARQGRELQRYTSAGGRIVVGCIPYRVRSGGEMEVLVITS-QKGHGMMFPKGGWELDES 62

Query: 459 XXXTAMREVLEEAGVIGKLGRCLG 530
               A RE LEEAGV G     LG
Sbjct: 63  MDEAARREALEEAGVRGDTETSLG 86


>06_01_1033 - 8080179-8080685
          Length = 168

 Score = 32.3 bits (70), Expect = 0.27
 Identities = 29/90 (32%), Positives = 41/90 (45%), Gaps = 8/90 (8%)
 Frame = +3

Query: 285 MVKEKPNSIRIY-DEEGFRRRAACIC--VRSDAES-EVLLVTSSRRP----DNWIXXXXX 440
           MV  +   ++ Y D  G R    CI   VR D    EVL+++S ++     D  +     
Sbjct: 5   MVARQGRELQRYSDNTGGRMVVGCIPYRVRGDGGGVEVLVISSQKKGAAAGDVVMFPKGG 64

Query: 441 XXXXXXXXXTAMREVLEEAGVIGKLGRCLG 530
                     A RE LEEAGV+G++G  LG
Sbjct: 65  WELDESVDEAARREALEEAGVLGEIGASLG 94


>03_01_0451 +
           3461229-3461561,3462043-3462290,3462425-3462716,
           3463057-3463209,3463288-3463674
          Length = 470

 Score = 31.1 bits (67), Expect = 0.62
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = -1

Query: 417 CQDVAMKSPEAPPIRRRNARRYTPRVAEIPPRRIF 313
           C DV +  P+ PP  R     Y  R+A  PP + F
Sbjct: 79  CVDVVLSVPQLPPAPREEREAYMERLAASPPDQKF 113


>01_06_0677 -
           31104736-31104897,31105046-31105234,31105313-31105470,
           31105558-31105648,31105787-31105961,31106065-31106204,
           31106293-31106511,31106589-31106718,31107163-31107229,
           31107347-31107441,31107535-31107606,31107681-31107736,
           31107995-31108060,31108151-31108264,31108787-31109092
          Length = 679

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -1

Query: 447 AQRHRLARSSCQDVAMKSPEAPPIRRRN-ARRYTPRVA 337
           A+R R A+ +    A  +P  PP RRR  ARR  P VA
Sbjct: 8   ARRAREAQENPAAAAAAAPAPPPARRRRAARRKEPEVA 45


>08_02_0444 -
           17209447-17209491,17210559-17210849,17211655-17211672,
           17211798-17211969,17212523-17212630,17212940-17213382
          Length = 358

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 14/44 (31%), Positives = 27/44 (61%)
 Frame = -3

Query: 391 RSTSDSASERTQIHAARRRNPSSSYILIELGFSLTIFYVNTNET 260
           +S +D  S++  +HA   +NP+SS +   +G S+ IF+   N++
Sbjct: 297 KSNADRISQKNTVHAHHVQNPASSGM---VGQSVIIFHAAENDS 337


>06_01_0240 -
           1822086-1822216,1822311-1822367,1822788-1822842,
           1824585-1824674,1824848-1824995,1825095-1825351
          Length = 245

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 12/21 (57%), Positives = 16/21 (76%)
 Frame = -3

Query: 538 SKTPRQRPSLPMTPASSSTSR 476
           S +P  R +LPM P+SSS+SR
Sbjct: 17  SSSPSPRLALPMNPSSSSSSR 37


>04_03_1017 + 21747044-21748051
          Length = 335

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 18/44 (40%), Positives = 23/44 (52%)
 Frame = -1

Query: 450 PAQRHRLARSSCQDVAMKSPEAPPIRRRNARRYTPRVAEIPPRR 319
           PA   R A +S  D    +PE+PP RR  +  Y+P     PPRR
Sbjct: 164 PASPSRRAAASSPDY---TPESPPRRRAASPDYSP---STPPRR 201


>11_06_0207 + 21214631-21216121
          Length = 496

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 13/46 (28%), Positives = 21/46 (45%)
 Frame = +3

Query: 285 MVKEKPNSIRIYDEEGFRRRAACICVRSDAESEVLLVTSSRRPDNW 422
           ++K  P  I ++D E  RR+     + S   S V +  S  + D W
Sbjct: 422 LIKNGPRDIGVFDLENRRRKKTISPIWSSWPSPVWITPSIAKADGW 467


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,899,439
Number of Sequences: 37544
Number of extensions: 230650
Number of successful extensions: 662
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 642
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 660
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1257681096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)