Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_G18
         (555 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC084268-2|AAL16324.1|  150|Caenorhabditis elegans Hypothetical ...    53   1e-07
U53139-3|ABN43098.1|   89|Caenorhabditis elegans Hypothetical pr...    28   3.9  
AC024791-30|AAL32250.2| 2460|Caenorhabditis elegans Hypothetical...    27   6.9  
Z81525-1|CAB04256.1|  897|Caenorhabditis elegans Hypothetical pr...    27   9.1  
U19615-1|AAB51351.1|  897|Caenorhabditis elegans Nucampholin pro...    27   9.1  

>AC084268-2|AAL16324.1|  150|Caenorhabditis elegans Hypothetical
           protein Y92H12BL.5 protein.
          Length = 150

 Score = 53.2 bits (122), Expect = 1e-07
 Identities = 29/94 (30%), Positives = 52/94 (55%), Gaps = 3/94 (3%)
 Frame = +3

Query: 282 KMVKEKPNSIRIYDEEGFRRRAACICVR-SDAESEVLLVTSSRRPDNWIXXXXXXXXXXX 458
           K  + + N +R+ D +GFR RAA +C++ +  E+ VLLV+  +    W+           
Sbjct: 6   KSRESERNKVRLRDTDGFRIRAAALCIKGTGKETLVLLVSGGKDGGKWVVPGGGIEKDEC 65

Query: 459 XXXTAMREVLEEAGVIGKLGRCLGVFEN--REHK 554
               A RE++EEAGV   + + +G+F++  R+H+
Sbjct: 66  AEEAAHRELMEEAGVRATILKKIGMFQDDVRKHR 99


>U53139-3|ABN43098.1|   89|Caenorhabditis elegans Hypothetical
           protein F18E3.13 protein.
          Length = 89

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 21/76 (27%), Positives = 36/76 (47%)
 Frame = -3

Query: 532 TPRQRPSLPMTPASSSTSRIAVXXXXXXXXXXXXXTIQLSGRRDEVTRSTSDSASERTQI 353
           T    PS+P TP  S  S  +               +++S    ++TR+  +SA+     
Sbjct: 22  TSASSPSIPTTPVVSRKS--SSLDAPRHSLNITVGVVEMS----QITRN--NSATSLNDF 73

Query: 352 HAARRRNPSSSYILIE 305
           + A R+N S+SY++IE
Sbjct: 74  NCALRKNSSASYLIIE 89


>AC024791-30|AAL32250.2| 2460|Caenorhabditis elegans Hypothetical
            protein Y47G6A.29 protein.
          Length = 2460

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 17/57 (29%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
 Frame = -3

Query: 397  VTRSTSDSAS--ERTQIHAARRRNPSSSYILIELGFSLTIFYVNTNETDDHKRKADI 233
            VT ST+ +A+  E  +     +++ SS++ + +L  SLT   +  +E D   +K+DI
Sbjct: 2131 VTLSTTPTAAAAEDKKTATLTKKSVSSTFKIDDLTVSLTKMKLTLSEADSSNKKSDI 2187


>Z81525-1|CAB04256.1|  897|Caenorhabditis elegans Hypothetical
           protein F33A8.1 protein.
          Length = 897

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -1

Query: 399 KSPEAPPIRRRNARRYTPRVAEIPPRR 319
           +SPE  P+R R+ RR + R     PRR
Sbjct: 101 ESPEKSPVRSRSPRRSSARSPSRSPRR 127


>U19615-1|AAB51351.1|  897|Caenorhabditis elegans Nucampholin
           protein.
          Length = 897

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -1

Query: 399 KSPEAPPIRRRNARRYTPRVAEIPPRR 319
           +SPE  P+R R+ RR + R     PRR
Sbjct: 101 ESPEKSPVRSRSPRRSSARSPSRSPRR 127


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,024,210
Number of Sequences: 27780
Number of extensions: 200079
Number of successful extensions: 563
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 559
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 562
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1134321766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)