Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_G18
         (555 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    25   0.51 
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    25   0.51 
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    23   2.7  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    21   8.4  
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    21   8.4  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   8.4  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 25.0 bits (52), Expect = 0.51
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +3

Query: 348 ACICVRSDAESEVLLVTSSRRPDNW 422
           +CICVR  AE   +L  S++  ++W
Sbjct: 487 SCICVRFIAEHTKMLEDSTKVKEDW 511


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 25.0 bits (52), Expect = 0.51
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +3

Query: 348 ACICVRSDAESEVLLVTSSRRPDNW 422
           +CICVR  AE   +L  S++  ++W
Sbjct: 487 SCICVRFIAEHTKMLEDSTKVKEDW 511


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = -1

Query: 453 LPAQRHRLARSSCQDVAMKSPEAPPIRRRNARRY 352
           +P +R   +  + QDVA +S    P +  ++R Y
Sbjct: 668 IPEERRIYSPITFQDVARRSVANSPTKNADSREY 701


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -3

Query: 400 EVTRSTSDSASERTQIHAARRRNPSSS 320
           ++ RS S   S+R       RR+PSSS
Sbjct: 15  KIIRSRSRRYSKRFSSSIVDRRSPSSS 41


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +2

Query: 8   ENVRHHPTWARNTRS 52
           EN+R+HP +   TR+
Sbjct: 341 ENLRNHPEYIDETRN 355


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -3

Query: 400 EVTRSTSDSASERTQIHAARRRNPSSS 320
           +V  STS   +E   +    R NP+SS
Sbjct: 252 DVESSTSSGGNEDANLLLKARLNPNSS 278


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,433
Number of Sequences: 438
Number of extensions: 2436
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15949830
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)