Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_G15
(580 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch... 29 0.37
SPCC338.17c |rad21||kleisin|Schizosaccharomyces pombe|chr 3|||Ma... 29 0.49
SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr... 28 1.1
SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|ch... 27 2.0
SPAC186.09 |||pyruvate decarboxylase |Schizosaccharomyces pombe|... 26 4.6
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 25 6.1
SPAP7G5.02c |gua2||GMP synthase [glutamine-hydrolyzing] |Schizos... 25 6.1
SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces po... 25 8.0
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo... 25 8.0
SPBC29A3.05 |||chromatin remodeling complex subunit|Schizosaccha... 25 8.0
>SPBC21D10.06c |map4||cell agglutination protein
Map4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 948
Score = 29.5 bits (63), Expect = 0.37
Identities = 15/45 (33%), Positives = 26/45 (57%)
Frame = +2
Query: 404 TTTATSGGCARSCRASSLLSPEMRMTSTQQPSITSPLTLNTPDIT 538
++T++SG S S +P TST QP+ +SP+T + P ++
Sbjct: 284 SSTSSSGSSQDSTTIDS--TPSTIATSTLQPTTSSPITTSAPSLS 326
>SPCC338.17c |rad21||kleisin|Schizosaccharomyces pombe|chr
3|||Manual
Length = 628
Score = 29.1 bits (62), Expect = 0.49
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = +2
Query: 449 SSLLSPEMRMTSTQQPSITSPLTLNTPDITFHXXXXXXXIGR 574
+ L S +M+ SITSPL LNT I F+ G+
Sbjct: 369 TELSSKQMKKQLADTSSITSPLCLNTSSIVFNATVNFTRNGK 410
>SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 749
Score = 27.9 bits (59), Expect = 1.1
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +3
Query: 63 DQTVFDSRSRILPNDAPRNGTYTVFPPVQTPAHYIP 170
+ +V S + LP+DA G PP + P+H+ P
Sbjct: 110 NSSVILSPGQFLPDDANAYGPKASLPPSEMPSHFHP 145
>SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 463
Score = 27.1 bits (57), Expect = 2.0
Identities = 19/60 (31%), Positives = 28/60 (46%)
Frame = +2
Query: 359 ICSDTACSVRRLRPRTTTATSGGCARSCRASSLLSPEMRMTSTQQPSITSPLTLNTPDIT 538
+ + TA +V T TAT+GG + +S +TSTQ ++TS NT T
Sbjct: 210 VTTTTAVTVTATETYTVTATNGGSTITSTGAS------TVTSTQPSTVTSTQRKNTATTT 263
>SPAC186.09 |||pyruvate decarboxylase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 572
Score = 25.8 bits (54), Expect = 4.6
Identities = 11/47 (23%), Positives = 25/47 (53%)
Frame = +1
Query: 199 AVGDTIALSVSSPKHLRRVGLSDGDAEDEQTEINQLYKMGIDKIVFL 339
+V ++ +PK V + DG ++ E++Q+ ++ + I+FL
Sbjct: 428 SVPSAFGYAIGAPKRNVVVFVGDGSFQETVQEVSQMVRLNLPIIMFL 474
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 25.4 bits (53), Expect = 6.1
Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
Frame = +1
Query: 412 CHF-WRLREELQGIEPPLARN-EDDFDAAAKYHVSANVEY 525
C F W E PLA E+D D H+S+N +Y
Sbjct: 3674 CEFPWSFSSESTDTGYPLALEIEEDVDGTMNLHLSSNFKY 3713
>SPAP7G5.02c |gua2||GMP synthase [glutamine-hydrolyzing]
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 539
Score = 25.4 bits (53), Expect = 6.1
Identities = 16/49 (32%), Positives = 23/49 (46%)
Frame = -2
Query: 180 SSVSEYNGLVSVLEEILYMSHFVVRRLEVFVIYCRTLFDPEIFSIEEVP 34
+SVS Y + +L+ SH + RRL +Y L P IE +P
Sbjct: 12 TSVSSYFDTILILDFGSQYSHLIARRLREIHVYAELL--PCTQKIEALP 58
>SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1313
Score = 25.0 bits (52), Expect = 8.0
Identities = 12/40 (30%), Positives = 16/40 (40%)
Frame = +1
Query: 343 FAYTLDLFRYGVFRKTTPPEDYNCHFWRLREELQGIEPPL 462
+ Y D GV K H WR+RE L+ + L
Sbjct: 82 YMYYTDKRHRGVISKKNAEPTETIHDWRMRERLKTVSAAL 121
>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1065
Score = 25.0 bits (52), Expect = 8.0
Identities = 9/46 (19%), Positives = 23/46 (50%)
Frame = +1
Query: 424 RLREELQGIEPPLARNEDDFDAAAKYHVSANVEYARYYVSFIIQFQ 561
+L E +Q I ++ A + + + +Y ++Y+ ++QF+
Sbjct: 897 KLEENVQCISDRFSKGMSGMGYAGEVRLGKSDDYDKWYIDILVQFR 942
>SPBC29A3.05 |||chromatin remodeling complex
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 139
Score = 25.0 bits (52), Expect = 8.0
Identities = 11/29 (37%), Positives = 12/29 (41%), Gaps = 2/29 (6%)
Frame = -3
Query: 188 PGLAPSRNIMGWCLYWRKYCI--CPISWC 108
P P R C YW KY C S+C
Sbjct: 93 PSYKPPRKFCNVCGYWGKYACQNCGTSYC 121
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,290,061
Number of Sequences: 5004
Number of extensions: 47118
Number of successful extensions: 144
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -