Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_G15
         (580 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0362 + 43063345-43063420,43064176-43064244,43064348-430644...    29   2.0  
03_04_0171 + 18001993-18001995,18002527-18002640,18002958-180031...    29   3.5  
08_01_0213 - 1703682-1703696,1703824-1703919,1704033-1704104,170...    28   6.2  
03_05_0264 - 22510997-22511012,22511641-22511709,22511783-225119...    28   6.2  
01_02_0015 + 10191793-10191957,10192085-10192229,10192331-101924...    28   6.2  
11_03_0025 + 9047646-9047958,9048150-9048474,9049833-9051828,905...    27   8.2  
07_03_0001 + 12219741-12219927,12219976-12220955                       27   8.2  
05_02_0022 + 5682045-5682301,5682477-5682720                           27   8.2  
04_04_0534 + 26071227-26071811                                         27   8.2  

>01_07_0362 +
           43063345-43063420,43064176-43064244,43064348-43064454,
           43064561-43064608
          Length = 99

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -3

Query: 287 CSSSASPSERPTRRKCLGEDTDKAIVSPTAS 195
           CSS   P  RPTRR  L  DT++  +    S
Sbjct: 11  CSSQRGPRRRPTRRPSLSYDTNETALKDAFS 41


>03_04_0171 +
           18001993-18001995,18002527-18002640,18002958-18003127,
           18003408-18003684
          Length = 187

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 4/65 (6%)
 Frame = +2

Query: 293 RLISCIKWVSIRLCSCRSLTR*ICSDTACSVRRLRPRTTTATSGG----CARSCRASSLL 460
           R + C+  +  R C C  LTR  C   A +V     R T A+S       A SC A++ L
Sbjct: 111 RRLVCL--IPTRRCRCLLLTRSCCLSRAPTVTSFPCRATVASSSSGATVVASSCGAAACL 168

Query: 461 SPEMR 475
           S   R
Sbjct: 169 SGARR 173


>08_01_0213 -
           1703682-1703696,1703824-1703919,1704033-1704104,
           1704372-1704444,1704508-1704710,1705058-1706330,
           1706800-1706868,1706940-1707088,1707275-1707487,
           1708385-1708669
          Length = 815

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
 Frame = +2

Query: 401 RTTTATSGGCARSCRA--SSLLSPEMRMTSTQ 490
           R T  TSGGC+R  RA  SS+ SP +R    Q
Sbjct: 64  RVTPPTSGGCSRPPRAPLSSVDSPYVRAKQAQ 95


>03_05_0264 -
           22510997-22511012,22511641-22511709,22511783-22511931,
           22512235-22512330,22512853-22512981,22513216-22513494,
           22513983-22514069
          Length = 274

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
 Frame = +2

Query: 401 RTTTATSGGCARSCRA--SSLLSPEMRMTSTQ 490
           R T  TSGGC+R  RA  SS+ SP +R    Q
Sbjct: 91  RVTPPTSGGCSRPPRAPPSSVDSPYVRAKQAQ 122


>01_02_0015 +
           10191793-10191957,10192085-10192229,10192331-10192419,
           10193009-10193063,10193607-10193692,10194006-10194065
          Length = 199

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 15/45 (33%), Positives = 19/45 (42%)
 Frame = +2

Query: 362 CSDTACSVRRLRPRTTTATSGGCARSCRASSLLSPEMRMTSTQQP 496
           C    CS   L P      S GCAR+   S  L   +R+ S+  P
Sbjct: 3   CRPAVCSPSALAPPRHRLLSLGCARTAAPSGGLPLRLRLRSSPAP 47


>11_03_0025 +
           9047646-9047958,9048150-9048474,9049833-9051828,
           9051991-9052190,9052851-9052899
          Length = 960

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
 Frame = +1

Query: 229 SSPKHLRRVGLSDGDAEDEQTE---INQLYKMGIDKIVFLPFAYTLDLFRYGVFR 384
           SSP+ +RR+ L   + ED++ +    NQ +   +  I+F  F    DLF++   R
Sbjct: 464 SSPRKIRRLSLQASNLEDQEMQKLVSNQSHIRSL--IMFRAFKKAPDLFKFHALR 516


>07_03_0001 + 12219741-12219927,12219976-12220955
          Length = 388

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = +2

Query: 392 LRPRTTTATSGGCARSCRASSLLSPEMRMTSTQQP 496
           +RP TT  TS GC R C     L+ E  M S+  P
Sbjct: 285 IRPPTTLLTSNGC-RICIRPPFLAREYLMESSWSP 318


>05_02_0022 + 5682045-5682301,5682477-5682720
          Length = 166

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = +1

Query: 382 RKTTPPEDYNCHFWRLREELQGIEPPL 462
           R + PP    CH WR R   +   PPL
Sbjct: 10  RTSAPPTASRCHPWRRRGRARRSSPPL 36


>04_04_0534 + 26071227-26071811
          Length = 194

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +2

Query: 380 SVRRLRPRTTTATSGGCARSCRASSLLSPEMRMTSTQQPSITS 508
           ++R  RPR T A SG  A +     + + E+R  ++  P  +S
Sbjct: 2   ALRATRPRRTQAVSGASAVAAGVRLITAVELRFLASSSPPASS 44


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,776,448
Number of Sequences: 37544
Number of extensions: 332989
Number of successful extensions: 1025
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 988
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1024
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1352600424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)