Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_G14
         (591 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyc...    28   0.89 
SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces...    28   1.2  
SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pomb...    26   4.7  
SPBC31A8.01c |cwl1|rtn1, SPBC651.13c|reticulon-like protein|Schi...    25   6.2  
SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyce...    25   6.2  
SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyc...    25   8.3  

>SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1050

 Score = 28.3 bits (60), Expect = 0.89
 Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 12/77 (15%)
 Frame = +3

Query: 141 HLLVGVTYVLHRQYYLWTSEWLYS--DVTFILNVEYMYLPCWYTLPLSSSEYR------- 293
           ++ +GVTY++ +    W    L S   +TF+L   ++ L C+     S+  +R       
Sbjct: 420 YVAIGVTYLITQISLFWDINMLSSMITMTFLLTFGFINLSCFLLRISSTPNFRPTFRYFN 479

Query: 294 ---TEINRIIRFGFIFY 335
              T +  I+ FG +FY
Sbjct: 480 RRTTLVGTILSFGVMFY 496


>SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 995

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +3

Query: 228 LNVEYMYLPCWYTLPLSSSEYRTEINRIIRFGF 326
           +N+ Y  LP WYTL   +S     + R + F F
Sbjct: 751 MNIRYSLLPYWYTLMYEASSQGLPLIRPLFFEF 783


>SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1283

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 16/38 (42%), Positives = 20/38 (52%)
 Frame = +1

Query: 103  VPTAGTGTPGCGSISWWE*PMFFIDSTICGPRSGSILM 216
            VPTAGT T   GS + W    F       G RSGS+++
Sbjct: 1082 VPTAGTVTSTTGSGTSW----FTTTVPATGTRSGSVIV 1115


>SPBC31A8.01c |cwl1|rtn1, SPBC651.13c|reticulon-like
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 308

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 13/50 (26%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
 Frame = -1

Query: 213 QNRATPRSTNSTVYEEHRSLP-PGDGPAPRCPGAGCRNGSERGACQFRAG 67
           +N      ++S+    H S   PG+  +P CP +G   G+++      AG
Sbjct: 59  ENPVIQNISSSSSEPHHTSQSTPGETSSPVCPVSGAHGGADKKCPALEAG 108


>SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 993

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +3

Query: 228 LNVEYMYLPCWYTLPLSSSEYRTEINRIIRFGF 326
           + + Y  LP WYTL  ++S   T + R + F F
Sbjct: 754 IEIRYSLLPYWYTLMHTASVDGTPMVRPLFFEF 786


>SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 969

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 13/51 (25%), Positives = 24/51 (47%)
 Frame = +3

Query: 162 YVLHRQYYLWTSEWLYSDVTFILNVEYMYLPCWYTLPLSSSEYRTEINRII 314
           Y + ++ Y W+S  +       + + Y  LP WYT+   +S+  T   R +
Sbjct: 709 YQISQEPYTWSS--VAEASRRAMYIRYSLLPYWYTIMAKASQDGTPALRAL 757


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,258,665
Number of Sequences: 5004
Number of extensions: 46250
Number of successful extensions: 104
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)