Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_G13
(473 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 120 1e-28
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 67 1e-12
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 66 3e-12
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 55 6e-09
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 55 6e-09
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 52 4e-08
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 50 2e-07
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 48 7e-07
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 47 1e-06
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 47 2e-06
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 44 9e-06
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 41 8e-05
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 40 2e-04
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 40 3e-04
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 39 3e-04
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 39 4e-04
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 37 0.002
SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces ... 36 0.002
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 36 0.003
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 36 0.003
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 36 0.004
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p... 34 0.013
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 31 0.090
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 31 0.12
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p... 29 0.27
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 29 0.36
SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces ... 28 0.63
SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces... 28 0.83
SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces pom... 28 0.83
SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 27 1.1
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 26 2.5
SPAC11E3.11c |||guanyl-nucleotide exchange factor |Schizosacchar... 25 5.9
SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces ... 25 7.8
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 120 bits (289), Expect = 1e-28
Identities = 56/82 (68%), Positives = 69/82 (84%), Gaps = 1/82 (1%)
Frame = +3
Query: 9 VKNLDDTIDDERLRKEFAPFGTITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMNGR 185
+KNL D +DDERL+ EF+ FGTITSAK+M E G+SKGFGFVC+++PEEA KAVTEMN R
Sbjct: 368 IKNLQDEVDDERLKAEFSAFGTITSAKIMTDEQGKSKGFGFVCYTTPEEANKAVTEMNQR 427
Query: 186 IVGTKPLYVALAQRKEDRKAHL 251
++ KPLYVALAQRKE R++ L
Sbjct: 428 MLAGKPLYVALAQRKEVRRSQL 449
Score = 64.9 bits (151), Expect = 6e-12
Identities = 31/80 (38%), Positives = 49/80 (61%), Gaps = 1/80 (1%)
Frame = +3
Query: 9 VKNLDDTIDDERLRKEFAPFGTITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGR 185
+KNLD ID++ L F+ FG I S KV +++ G +KG+GFV F S E A A+ +NG
Sbjct: 172 IKNLDPAIDNKALHDTFSAFGKILSCKVAVDELGNAKGYGFVHFDSVESANAAIEHVNGM 231
Query: 186 IVGTKPLYVALAQRKEDRKA 245
++ K +YV + +R++
Sbjct: 232 LLNDKKVYVGHHVSRRERQS 251
Score = 60.5 bits (140), Expect = 1e-10
Identities = 32/82 (39%), Positives = 48/82 (58%), Gaps = 1/82 (1%)
Frame = +3
Query: 9 VKNLDDTIDDERLRKEFAPFGTITSAKVMLEDG-RSKGFGFVCFSSPEEATKAVTEMNGR 185
+KNLD I ++ F FG ITS ++ + + +GFGFV +++ E A KAV E+N +
Sbjct: 265 IKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAVDELNDK 324
Query: 186 IVGTKPLYVALAQRKEDRKAHL 251
K LYV AQ+K +R+ L
Sbjct: 325 EYKGKKLYVGRAQKKHEREEEL 346
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 66.9 bits (156), Expect = 1e-12
Identities = 37/86 (43%), Positives = 53/86 (61%), Gaps = 4/86 (4%)
Frame = +3
Query: 9 VKNLDDTI--DDERLRKEFAPFGTITSAKVMLEDGR--SKGFGFVCFSSPEEATKAVTEM 176
VKNLDD I + ++L + F+ FG I S + SKG+GFV FS P EA +A+ +
Sbjct: 423 VKNLDDNIVGNTQQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSFSHPFEAVQAINTL 482
Query: 177 NGRIVGTKPLYVALAQRKEDRKAHLT 254
NG + G K L+V A+++EDRK L+
Sbjct: 483 NGVLFGKKRLFVNYAEKREDRKKRLS 508
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 66.1 bits (154), Expect = 3e-12
Identities = 36/81 (44%), Positives = 49/81 (60%), Gaps = 4/81 (4%)
Frame = +3
Query: 9 VKNLDDTIDD--ERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEM 176
VKNLDDT+ +L F+PFG+I S+ + G SKG+GFV F E A +A +
Sbjct: 386 VKNLDDTVITCKSQLEDLFSPFGSILSSMLACYPNSGISKGYGFVAFRQIEAAVRAKDTL 445
Query: 177 NGRIVGTKPLYVALAQRKEDR 239
NG +VG K ++V A+RK DR
Sbjct: 446 NGMMVGKKRIFVCFAERKSDR 466
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 54.8 bits (126), Expect = 6e-09
Identities = 24/72 (33%), Positives = 47/72 (65%), Gaps = 1/72 (1%)
Frame = +3
Query: 9 VKNLDDTIDDERLRKEFAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGR 185
V NL + ++DE L + F+ + ++ KV+ + +G+++GFGFV F ++ KA E NG+
Sbjct: 34 VGNLGNDVNDESLYQAFSEYPSLVKTKVVRDREGKTRGFGFVSFKDSDQFLKAWREKNGK 93
Query: 186 IVGTKPLYVALA 221
+G++P+ ++ A
Sbjct: 94 YIGSRPVKLSRA 105
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 54.8 bits (126), Expect = 6e-09
Identities = 29/79 (36%), Positives = 44/79 (55%), Gaps = 2/79 (2%)
Frame = +3
Query: 9 VKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNG 182
V NLD +D+ L F+ G + A + D GRSKG+GFV + S E A A+ MN
Sbjct: 103 VGNLDPLVDERVLYDTFSALGQLVKAPQVARDENGRSKGYGFVSYDSFETADAAIEAMNN 162
Query: 183 RIVGTKPLYVALAQRKEDR 239
+ + KP+ V+ A ++E +
Sbjct: 163 QFLMNKPITVSYAFKREGK 181
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 52.0 bits (119), Expect = 4e-08
Identities = 29/68 (42%), Positives = 43/68 (63%), Gaps = 7/68 (10%)
Frame = +3
Query: 9 VKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVT---- 170
V L +DD+ L +EF +GTI A+V+++ GRSKG+G+V F +PE A AV
Sbjct: 267 VGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAVAANGT 326
Query: 171 -EMNGRIV 191
E++GR+V
Sbjct: 327 KEIDGRMV 334
Score = 41.1 bits (92), Expect = 8e-05
Identities = 25/67 (37%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Frame = +3
Query: 9 VKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNG 182
V NL ++ L F G I S ++ + GR KGFG+V FS + A K V EMNG
Sbjct: 370 VGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCV-EMNG 428
Query: 183 RIVGTKP 203
+ +P
Sbjct: 429 HFIAGRP 435
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 50.0 bits (114), Expect = 2e-07
Identities = 26/75 (34%), Positives = 44/75 (58%), Gaps = 2/75 (2%)
Frame = +3
Query: 9 VKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNG 182
V + + ++ L++ F+ FGT+T ++M E S+GFGF+ FS+ EEAT A+ +N
Sbjct: 105 VSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVEEATSAIDNLNS 164
Query: 183 RIVGTKPLYVALAQR 227
+ + L V A+R
Sbjct: 165 QEFYGRVLNVQKAKR 179
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 48.0 bits (109), Expect = 7e-07
Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 3/81 (3%)
Frame = +3
Query: 9 VKNLDDTIDDERLR---KEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMN 179
+K + D + R R + P+ I K+ E R +GFGFV F++ E+ ++A+ EMN
Sbjct: 221 LKEMFDAYNPTRARIAVRSLPPY-IIRRIKLRGEQRRGRGFGFVSFANAEDQSRAIEEMN 279
Query: 180 GRIVGTKPLYVALAQRKEDRK 242
G+ VG L V A +ED++
Sbjct: 280 GKQVGDLTLVVKSAVFREDKQ 300
Score = 29.1 bits (62), Expect = 0.36
Identities = 18/83 (21%), Positives = 35/83 (42%), Gaps = 6/83 (7%)
Frame = +3
Query: 9 VKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRS------KGFGFVCFSSPEEATKAVT 170
V L + +R F GT+ + R G FV F++ E+ KA+
Sbjct: 48 VGRLSTSTKKSEIRSLFETVGTVRKVTIPFRRVRRGTRLVPSGIAFVTFNNQEDVDKAIE 107
Query: 171 EMNGRIVGTKPLYVALAQRKEDR 239
+NG+ + + + V A+ +++
Sbjct: 108 TLNGKTLDDREIVVQKARPVQEQ 130
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 47.2 bits (107), Expect = 1e-06
Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Frame = +3
Query: 9 VKNLDDTIDDERLRKEFAPFGTITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGR 185
V N+ + DE ++ F PFG I + +D RSKGFG++ + +P A A+ +MNG
Sbjct: 344 VSNIHFNLTDEDVKAIFEPFGDIEFVHLQRDDQNRSKGFGYIQYRNPISARNALEKMNGF 403
Query: 186 IVGTKPLYVALAQRK 230
+ + + V L K
Sbjct: 404 DLAGRNMRVCLGNDK 418
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 46.8 bits (106), Expect = 2e-06
Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Frame = +3
Query: 9 VKNLDDTIDDERLRKEFAPFGTITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGR 185
V NL D L F G++ A++ E GRSKGFG V F + +A ++ ++NG
Sbjct: 284 VGNLPWATSDRNLLDLFTDIGSVIRARIAYEPTGRSKGFGVVQFENENDAASSIEKLNGY 343
Query: 186 IVGTKPLYVALA 221
G +PL ++ A
Sbjct: 344 RYGGRPLQLSYA 355
Score = 31.1 bits (67), Expect = 0.090
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Frame = +3
Query: 45 LRKEFAPFGTITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 221
L+ F G++ A + + ++GRS+G G V SS +EA A+ ++ + L V L
Sbjct: 199 LKDLFRQAGSVIRADIQMNQEGRSRGIGIVVMSSMKEAMHAIQMLHNTDFMGRTLEVRL- 257
Query: 222 QRKEDRKAH 248
DR AH
Sbjct: 258 ----DRFAH 262
Score = 27.1 bits (57), Expect = 1.5
Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Frame = +3
Query: 9 VKNLDDTIDDERLRKEFAPFGTITSAKVM-LEDGRSKGFGFVCFSSPEEATKAV-TEMNG 182
V NL + L++ G + + +++ L +G SKG + +S+ EEA A+ T N
Sbjct: 70 VGNLSYQVRWFELKEFMGQVGNVLNCEILNLPNGLSKGCAIIEYSTAEEARTAIKTLSNQ 129
Query: 183 RIVG 194
+ +G
Sbjct: 130 KFMG 133
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 44.4 bits (100), Expect = 9e-06
Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 3/84 (3%)
Frame = +3
Query: 9 VKNLDDTIDDERLRKEFAP-FGTITSAKVMLEDGR--SKGFGFVCFSSPEEATKAVTEMN 179
V +L +++ + FA + + SAK+M + S+G+GFV F+ + A+ EM
Sbjct: 190 VGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVRFTDENDQKSALAEMQ 249
Query: 180 GRIVGTKPLYVALAQRKEDRKAHL 251
G+I G +P+ V LA K KAH+
Sbjct: 250 GQICGDRPIRVGLATPKS--KAHV 271
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 41.1 bits (92), Expect = 8e-05
Identities = 24/69 (34%), Positives = 35/69 (50%)
Frame = +3
Query: 9 VKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRI 188
V L + ++ L+ F PFG I + K+ KG GFV +S A KA+ M G +
Sbjct: 301 VGGLASNLSEKDLQVCFQPFGRILNIKIPF----GKGCGFVQYSEKSAAEKAINTMQGAL 356
Query: 189 VGTKPLYVA 215
VGT + +A
Sbjct: 357 VGTSHIRLA 365
Score = 39.9 bits (89), Expect = 2e-04
Identities = 26/77 (33%), Positives = 43/77 (55%), Gaps = 3/77 (3%)
Frame = +3
Query: 9 VKNLDDTIDDERLRKEFAP-FGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMN 179
V +L T +D L F + + TSAK++++ G S+ +GFV FSS +E A+ M
Sbjct: 186 VGDLLPTTEDSDLFMTFRSIYPSCTSAKIIVDPVTGLSRKYGFVRFSSEKEQQHALMHMQ 245
Query: 180 GRIVGTKPLYVALAQRK 230
G + +PL +++A K
Sbjct: 246 GYLCQGRPLRISVASPK 262
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 39.9 bits (89), Expect = 2e-04
Identities = 19/75 (25%), Positives = 43/75 (57%)
Frame = +3
Query: 9 VKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRI 188
V N+D ++++ + F +G + S ++ + KGFG+V ++ ++A A++ G+
Sbjct: 761 VTNIDFKVNEKDVETFFRDYGQVESVRIPKRFNQHKGFGYVVMTTNQDAENALSAA-GKQ 819
Query: 189 VGTKPLYVALAQRKE 233
+G + L V L++ +E
Sbjct: 820 LGNRVLNVVLSKPRE 834
Score = 27.5 bits (58), Expect = 1.1
Identities = 20/68 (29%), Positives = 35/68 (51%)
Frame = +3
Query: 9 VKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRI 188
V N+D T+++ RLR F +G + +V+L +G V F +A KA + G
Sbjct: 878 VTNVDGTVNEARLRSLFESYGKL--YRVVLHP-EHEG-AVVEFLDIHDAGKASLALEGHE 933
Query: 189 VGTKPLYV 212
+G + L++
Sbjct: 934 IGGRLLHI 941
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 39.5 bits (88), Expect = 3e-04
Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Frame = +3
Query: 9 VKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNG 182
V N+D ++ E L+ FA G++ ++ + G KGF ++ FS P A+ +NG
Sbjct: 59 VGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSLVPNALL-LNG 117
Query: 183 RIVGTKPLYV 212
++ +PL V
Sbjct: 118 SMLHERPLKV 127
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 39.1 bits (87), Expect = 3e-04
Identities = 20/60 (33%), Positives = 35/60 (58%), Gaps = 5/60 (8%)
Frame = +3
Query: 36 DERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTE---MNGRIVGTK 200
D+ LR F FG + VM + GRS+GFGF+ F +P+ + +++ ++G+I+ K
Sbjct: 176 DDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVMSKEHHLDGKIIDPK 235
Score = 35.5 bits (78), Expect = 0.004
Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Frame = +3
Query: 36 DERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLY 209
+E R F FG + A +M++ GR +GFGFV + + E A +A + KP+
Sbjct: 260 EEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYEN-ESAVEATMSQPYITIHGKPVE 318
Query: 210 VALAQRKED-RKAH 248
V A K R +H
Sbjct: 319 VKRATPKASLRDSH 332
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 38.7 bits (86), Expect = 4e-04
Identities = 24/61 (39%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Frame = +3
Query: 6 RVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEMN 179
RV NL D +E LR F FG I + E GR+KGF FV + + A KA ++
Sbjct: 205 RVTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSYYDRDCAIKARDRLD 264
Query: 180 G 182
G
Sbjct: 265 G 265
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 36.7 bits (81), Expect = 0.002
Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Frame = +3
Query: 21 DDTIDDERLRKEFAPFGTITSAKVMLED---GRSKGFGFVCFSSPEEATKAVTEMNGRIV 191
++ +D K G + AKV E GRSKGFGF+ F S + A A+ +NGR +
Sbjct: 505 EENLDKGHRLKRGKSGGVLKQAKVETEKAGAGRSKGFGFMQFISHKYALMALRWLNGREI 564
Query: 192 GTKPL 206
K +
Sbjct: 565 TVKKI 569
Score = 36.3 bits (80), Expect = 0.002
Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Frame = +3
Query: 9 VKNLDDTIDD-ERLRKEFAPFGTITSAKVMLEDG-RSKGFGFVCFSSPEEATKAVTEMNG 182
++NL +I + L F+ FG + K+ + G R GF FV + A +A+ +NG
Sbjct: 111 IRNLPWSIKKPQHLEPHFSKFGKVREIKIPTKGGGRMCGFAFVWMKDRKAAEEAMNSLNG 170
Query: 183 RIVGTKPLYVALAQRKE 233
+ +P+ V A K+
Sbjct: 171 TEIDGRPIAVDWAVSKD 187
>SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 199
Score = 36.3 bits (80), Expect = 0.002
Identities = 17/40 (42%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Frame = +3
Query: 102 DGRSKGFGFVCFSSPEEATKAVTEMNGRIV-GTKPLYVAL 218
+GRSKG + FS P +AT+A + GR+V GT+ + V +
Sbjct: 92 NGRSKGIATIIFSRPGDATRAYEQYEGRLVDGTRKMKVEI 131
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 35.9 bits (79), Expect = 0.003
Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Frame = +3
Query: 9 VKNLDDTIDDERLRKEFAPFGTITSAKVM-LED-GRSKGFGFVCFSSPEEATKAV 167
V NLD D L++ F G I ++M ED G+ KGFGFV F + KA+
Sbjct: 232 VGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDFPDIDTCMKAM 286
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 35.9 bits (79), Expect = 0.003
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Frame = +3
Query: 9 VKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEMNG 182
V N+ + +E++ F G + S ++++ E G+ KG+GF + P A AV +N
Sbjct: 9 VGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHDPATAASAVRNLNN 68
Query: 183 RIVGTKPLYV 212
GT+ L V
Sbjct: 69 YDAGTRRLRV 78
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 35.5 bits (78), Expect = 0.004
Identities = 27/88 (30%), Positives = 40/88 (45%), Gaps = 7/88 (7%)
Frame = +3
Query: 9 VKNLDDTIDDERLRKEFAPFGTITSAKVMLED-----GR--SKGFGFVCFSSPEEATKAV 167
VKNL+ + E +K F P SA + + G+ S GFGFV F A A+
Sbjct: 623 VKNLNFSTKQEEFQKVFKPLEGYLSAVIRAKPDPKRPGKYLSMGFGFVEFKDKASAVAAM 682
Query: 168 TEMNGRIVGTKPLYVALAQRKEDRKAHL 251
MNG ++ L + L+ + D A +
Sbjct: 683 HAMNGFVLDGHKLEIKLSHQGVDAAAEV 710
Score = 33.5 bits (73), Expect = 0.017
Identities = 17/76 (22%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Frame = +3
Query: 9 VKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNG 182
++NL + ++ L+ F PFG + + ++ KGF ++ F ++A +A E++
Sbjct: 327 LRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDFHDADDAVRAYLELDA 386
Query: 183 RIVGTKPLYVALAQRK 230
+ + L+V A+ +
Sbjct: 387 KPFQGRLLHVLPAKAR 402
Score = 29.9 bits (64), Expect = 0.21
Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 7/85 (8%)
Frame = +3
Query: 9 VKNLDDTIDDERLRKEFAPF----GTITSAKVM-LEDGRSKGFGFVCFSSPEEATKAVTE 173
+KN+ D E+L IT V ++G S+ F F+ F + E+A KA+
Sbjct: 6 IKNIPRYYDKEKLSTYLKSLPQLDAEITDVSVAKTKEGVSRRFAFIGFKNEEDADKAIRY 65
Query: 174 MNGRIVGTKPLYV--ALAQRKEDRK 242
+N V T + V AL R + K
Sbjct: 66 LNKSYVETSRIEVHRALDYRSANEK 90
>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
protein 1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 567
Score = 33.9 bits (74), Expect = 0.013
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Frame = +3
Query: 9 VKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEM 176
++ L DE L FG ++S+K ++ E KG+GF CF + A ++ M
Sbjct: 300 IRGLPPNTSDENLLLYTNRFGKVSSSKAIIDMETNLCKGYGFACFEEEKSALICISAM 357
>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 31.1 bits (67), Expect = 0.090
Identities = 17/57 (29%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Frame = +3
Query: 36 DERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTK 200
+E++ FA FG + + + L+ G KG+ + +++ E+A KAV E N ++ K
Sbjct: 23 EEQVEDLFADFGPVKNLHLNLDRRTGYVKGYALIEYATLEQAQKAVDEKNLSLLDEK 79
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 30.7 bits (66), Expect = 0.12
Identities = 18/53 (33%), Positives = 26/53 (49%)
Frame = +3
Query: 9 VKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAV 167
+ N DD++ ERL+++F FG I R K FV F+S A A+
Sbjct: 418 IGNADDSLTIERLKEDFEEFGEIEYVNFF----REKNCAFVNFTSLASAINAI 466
>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 275
Score = 29.5 bits (63), Expect = 0.27
Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Frame = +3
Query: 9 VKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGR-SKGFGFVCFSSPEEATKAVTEMNGR 185
V D + L EF PFG + + + R S+ F FV + +A A E++GR
Sbjct: 11 VTGFRDGMRARELAYEFEPFGPLIRCDIPIPRTRTSRPFAFVEYEDSRDAEDAYYEVHGR 70
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 29.1 bits (62), Expect = 0.36
Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Frame = +3
Query: 9 VKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEM 176
+ NLD ++++ + F+ FG ++ E G+SKGF F+ + AV M
Sbjct: 35 IGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKYEDQRSTVLAVDNM 92
>SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 490
Score = 28.3 bits (60), Expect = 0.63
Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
Frame = +3
Query: 9 VKNLDDTIDDERLRKEFAPFGTIT--SAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNG 182
VKN+ +++ + L F G + ++G +G F F PEEA V +NG
Sbjct: 206 VKNIPFSLEKDTLLDHFKQLGIPRPYAFNYHYDNGIFRGLAFANFYRPEEAQVVVQTLNG 265
Query: 183 RIVGTKPLYV 212
+ + L V
Sbjct: 266 YEINGRRLRV 275
>SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 576
Score = 27.9 bits (59), Expect = 0.83
Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Frame = +3
Query: 9 VKNLDDTIDDERLRKEFAPFGTIT--SAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNG 182
+KN+ ++ E L K F + ++G +G F F SPEEA V +NG
Sbjct: 236 IKNIPFSLKKEVLFKVFTALDIPRPYAFNYHFDNGVFRGLAFANFHSPEEAKTVVQVLNG 295
>SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 355
Score = 27.9 bits (59), Expect = 0.83
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = -3
Query: 357 QEVWWEQSILLHYLVGISDPFVAYAYLPCVACTVKSNGLC 238
+E+W+E L H LVG C CT+ S GLC
Sbjct: 192 KELWFE---LNHTLVGFGQTICLPRGRRCDMCTLSSKGLC 228
>SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 243
Score = 27.5 bits (58), Expect = 1.1
Identities = 16/72 (22%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Frame = +3
Query: 9 VKNLDDTIDDERLRKEFAPFGTITSA--KVMLEDGRSKGFGFVCFSSPEEATKAVTEMNG 182
V+NL + E + + F +G I + + +KG+ ++ + ++A AV +MN
Sbjct: 103 VENLTRNVTKEHIAEIFGIYGLIDHIFMPIYKKSELNKGYCYIEYVYHDQAANAVDKMNN 162
Query: 183 RIVGTKPLYVAL 218
+ + L+V++
Sbjct: 163 AELDGEELFVSI 174
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 26.2 bits (55), Expect = 2.5
Identities = 13/52 (25%), Positives = 33/52 (63%), Gaps = 2/52 (3%)
Frame = +3
Query: 75 ITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 224
+TS +++++ RS+GFG+V F + + + A+ ++G + +P+ + +A+
Sbjct: 118 VTSIRLVIDPLTERSRGFGYVEFETADTLSAALA-LSGEDLMGRPVRITVAE 168
>SPAC11E3.11c |||guanyl-nucleotide exchange factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 942
Score = 25.0 bits (52), Expect = 5.9
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = +3
Query: 360 QRFYGPAQMPQIRPXTRWTGQAPVRPST 443
+R +G M I T Q PVRPST
Sbjct: 132 RRDFGMTSMSSITSSTPTPSQLPVRPST 159
>SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 878
Score = 24.6 bits (51), Expect = 7.8
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -3
Query: 336 SILLHYLVGISDPFVAYAYLPCVACTVKSNG 244
S+L Y+V ++ VA +P V VKSNG
Sbjct: 770 SLLEDYVVYLTSKTVAPENVPAVISIVKSNG 800
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,011,815
Number of Sequences: 5004
Number of extensions: 41937
Number of successful extensions: 158
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 182448900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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