Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_G13
         (473 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    23   1.7  
AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.          21   5.1  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   6.7  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   8.9  
AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced prot...    21   8.9  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   8.9  

>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = -2

Query: 331 PPALLGWNI 305
           PP LLGWN+
Sbjct: 17  PPRLLGWNV 25


>AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.
          Length = 226

 Score = 21.4 bits (43), Expect = 5.1
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +2

Query: 350 TSCTTLLWSSTNAANT 397
           T CTT  WS    A T
Sbjct: 199 TCCTTXWWSXXTVAXT 214


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.0 bits (42), Expect = 6.7
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = -2

Query: 433 LTGAWPVHRVXGRICG 386
           L G +PVH   G  CG
Sbjct: 59  LGGLFPVHEKGGASCG 74


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 20.6 bits (41), Expect = 8.9
 Identities = 5/10 (50%), Positives = 9/10 (90%)
 Frame = +2

Query: 104  WSQQRFWIRM 133
            W+++RFW R+
Sbjct: 1191 WNEKRFWERL 1200


>AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 87

 Score = 20.6 bits (41), Expect = 8.9
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -2

Query: 289 IRILAMRCMYCEVK 248
           +RI   RC YC +K
Sbjct: 64  LRINRNRCQYCRLK 77


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 20.6 bits (41), Expect = 8.9
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -2

Query: 289 IRILAMRCMYCEVK 248
           +RI   RC YC +K
Sbjct: 113 LRINRNRCQYCRLK 126


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,024
Number of Sequences: 438
Number of extensions: 3120
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12805416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)