Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_G12
(536 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein Ubi3|Schi... 134 8e-33
SPAC589.10c |||ribomal-ubiquitin fusion protein Ubi5|Schizosacch... 134 8e-33
SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein Ubi2|... 128 4e-31
SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein Ubi1|Schiz... 128 4e-31
SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr 2|||M... 128 4e-31
SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like pro... 81 1e-16
SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase Ubp6|Schizosacc... 43 3e-05
SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces pomb... 42 8e-05
SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyc... 41 1e-04
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz... 31 0.11
SPAC29B12.06c |rcd1||RNA-binding protein Rcd1 |Schizosaccharomyc... 27 1.8
SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|... 25 7.2
SPBC1718.06 |msp1|mgm1|mitochondrial GTPase Msp1|Schizosaccharom... 25 9.5
>SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein
Ubi3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 134 bits (324), Expect = 8e-33
Identities = 69/99 (69%), Positives = 75/99 (75%)
Frame = -1
Query: 536 KTLTGKTITVEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES 357
KTLTGKTIT+EVE SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES
Sbjct: 6 KTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES 65
Query: 356 TLHLVXXXXXXXXXXXXKNYSTPXXXXXXXXXXKLAVLR 240
TLHLV K Y+TP +LAVL+
Sbjct: 66 TLHLVLRLRGGGKKRKKKTYTTPKKIKHKHKKVELAVLK 104
Score = 60.1 bits (139), Expect = 2e-10
Identities = 25/44 (56%), Positives = 32/44 (72%)
Frame = -2
Query: 238 YYKVDENGKIHRLRRECTGEQCGAGVFMAVMEDRHYCGKCHSTM 107
YYKV+++G + RLRREC CGA FMA +DR YCG+CH T+
Sbjct: 105 YYKVEDDGSVKRLRRECPN--CGASTFMANHKDRLYCGRCHLTL 146
>SPAC589.10c |||ribomal-ubiquitin fusion protein
Ubi5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 134 bits (324), Expect = 8e-33
Identities = 69/99 (69%), Positives = 75/99 (75%)
Frame = -1
Query: 536 KTLTGKTITVEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES 357
KTLTGKTIT+EVE SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES
Sbjct: 6 KTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES 65
Query: 356 TLHLVXXXXXXXXXXXXKNYSTPXXXXXXXXXXKLAVLR 240
TLHLV K Y+TP +LAVL+
Sbjct: 66 TLHLVLRLRGGGKKRKKKTYTTPKKIKHKHKKVELAVLK 104
Score = 60.1 bits (139), Expect = 2e-10
Identities = 25/44 (56%), Positives = 32/44 (72%)
Frame = -2
Query: 238 YYKVDENGKIHRLRRECTGEQCGAGVFMAVMEDRHYCGKCHSTM 107
YYKV+++G + RLRREC CGA FMA +DR YCG+CH T+
Sbjct: 105 YYKVEDDGSVKRLRRECPN--CGASTFMANHKDRLYCGRCHLTL 146
>SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein
Ubi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 128 bits (310), Expect = 4e-31
Identities = 61/65 (93%), Positives = 64/65 (98%)
Frame = -1
Query: 536 KTLTGKTITVEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES 357
KTLTGKTIT+EVE SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES
Sbjct: 6 KTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES 65
Query: 356 TLHLV 342
TLHLV
Sbjct: 66 TLHLV 70
>SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein
Ubi1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 128 bits (310), Expect = 4e-31
Identities = 61/65 (93%), Positives = 64/65 (98%)
Frame = -1
Query: 536 KTLTGKTITVEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES 357
KTLTGKTIT+EVE SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES
Sbjct: 6 KTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES 65
Query: 356 TLHLV 342
TLHLV
Sbjct: 66 TLHLV 70
>SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 382
Score = 128 bits (310), Expect = 4e-31
Identities = 61/65 (93%), Positives = 64/65 (98%)
Frame = -1
Query: 536 KTLTGKTITVEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES 357
KTLTGKTIT+EVE SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES
Sbjct: 6 KTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES 65
Query: 356 TLHLV 342
TLHLV
Sbjct: 66 TLHLV 70
Score = 128 bits (310), Expect = 4e-31
Identities = 61/65 (93%), Positives = 64/65 (98%)
Frame = -1
Query: 536 KTLTGKTITVEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES 357
KTLTGKTIT+EVE SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES
Sbjct: 82 KTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES 141
Query: 356 TLHLV 342
TLHLV
Sbjct: 142 TLHLV 146
Score = 128 bits (310), Expect = 4e-31
Identities = 61/65 (93%), Positives = 64/65 (98%)
Frame = -1
Query: 536 KTLTGKTITVEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES 357
KTLTGKTIT+EVE SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES
Sbjct: 158 KTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES 217
Query: 356 TLHLV 342
TLHLV
Sbjct: 218 TLHLV 222
Score = 128 bits (310), Expect = 4e-31
Identities = 61/65 (93%), Positives = 64/65 (98%)
Frame = -1
Query: 536 KTLTGKTITVEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES 357
KTLTGKTIT+EVE SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES
Sbjct: 234 KTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES 293
Query: 356 TLHLV 342
TLHLV
Sbjct: 294 TLHLV 298
Score = 128 bits (310), Expect = 4e-31
Identities = 61/65 (93%), Positives = 64/65 (98%)
Frame = -1
Query: 536 KTLTGKTITVEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES 357
KTLTGKTIT+EVE SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES
Sbjct: 310 KTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES 369
Query: 356 TLHLV 342
TLHLV
Sbjct: 370 TLHLV 374
>SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like
protein modifier Ned8|Schizosaccharomyces pombe|chr
2|||Manual
Length = 78
Score = 81.0 bits (191), Expect = 1e-16
Identities = 32/65 (49%), Positives = 49/65 (75%)
Frame = -1
Query: 536 KTLTGKTITVEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES 357
KTLTGK I ++++P+D + +K ++++KEGIPP QQRLI+AGKQ+ D + Y+++ S
Sbjct: 6 KTLTGKEIELDIDPNDKVSRIKERVEEKEGIPPSQQRLIYAGKQMADDKNAESYHLEGGS 65
Query: 356 TLHLV 342
LHLV
Sbjct: 66 VLHLV 70
>SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase
Ubp6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 467
Score = 42.7 bits (96), Expect = 3e-05
Identities = 19/58 (32%), Positives = 34/58 (58%)
Frame = -1
Query: 524 GKTITVEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTL 351
GK +E+EP++T +K ++ +PP++Q++I G QL+D L I+ +TL
Sbjct: 10 GKKYDLEIEPNETGSTLKHQLYSLTQVPPERQKVIVKGGQLKDDVLLGSVGIKPNATL 67
>SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 368
Score = 41.5 bits (93), Expect = 8e-05
Identities = 17/54 (31%), Positives = 34/54 (62%)
Frame = -1
Query: 521 KTITVEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKE 360
K + +V I +K KIQ ++ ++Q+LI++G+ L D +T+ +YNI+++
Sbjct: 12 KFVISDVSADTKISELKEKIQTQQNYEVERQKLIYSGRILADDKTVGEYNIKEQ 65
>SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 354
Score = 40.7 bits (91), Expect = 1e-04
Identities = 21/65 (32%), Positives = 34/65 (52%)
Frame = -1
Query: 536 KTLTGKTITVEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES 357
K + V V+ ++ +K I I ++QRLI+AG+ L+D +L Y IQ
Sbjct: 9 KAANDQKYAVTVDSESSVLALKEAIAPVADIEKERQRLIYAGRVLKDEESLKTYKIQDGH 68
Query: 356 TLHLV 342
++HLV
Sbjct: 69 SIHLV 73
>SPAC22E12.11c |set3||histone lysine methyltransferase
Set3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 859
Score = 31.1 bits (67), Expect = 0.11
Identities = 16/28 (57%), Positives = 18/28 (64%)
Frame = +2
Query: 392 DHLPTVYRRRSIFVDQEGCPPYLESWLS 475
DHLP+V RRRSI D G P Y + LS
Sbjct: 611 DHLPSVKRRRSIANDFHGKPDYNKRSLS 638
>SPAC29B12.06c |rcd1||RNA-binding protein Rcd1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 283
Score = 27.1 bits (57), Expect = 1.8
Identities = 12/50 (24%), Positives = 21/50 (42%)
Frame = -2
Query: 238 YYKVDENGKIHRLRRECTGEQCGAGVFMAVMEDRHYCGKCHSTMVFKDDD 89
Y ++ +N + R C E F V++D H KC + ++ D
Sbjct: 228 YLRLSDNPRAREALRHCLPEPLRDATFAQVLKDDHNTKKCLAQLLINLSD 277
>SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1036
Score = 25.0 bits (52), Expect = 7.2
Identities = 11/39 (28%), Positives = 20/39 (51%)
Frame = +2
Query: 389 FDHLPTVYRRRSIFVDQEGCPPYLESWLSHFR*YQRVRP 505
FDH+ + + + + ++D P L+ +LS F Y P
Sbjct: 556 FDHIDSSFVQLATYIDTSMIPSSLKPYLSVFAKYIEAAP 594
>SPBC1718.06 |msp1|mgm1|mitochondrial GTPase
Msp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 903
Score = 24.6 bits (51), Expect = 9.5
Identities = 11/32 (34%), Positives = 15/32 (46%)
Frame = +2
Query: 362 PSGYCNQRGFDHLPTVYRRRSIFVDQEGCPPY 457
PS + RG + P+ RRR + G PY
Sbjct: 17 PSSFLKPRGLVYRPSQIRRRVSLLSLSGFHPY 48
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,866,556
Number of Sequences: 5004
Number of extensions: 31065
Number of successful extensions: 89
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 222442660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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