Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_G10
         (599 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1322.14c |vtc4||vacuolar transporter chaperone |Schizosaccha...    26   4.8  
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    26   4.8  
SPAC1B1.03c |kap95||karyopherin Kap95|Schizosaccharomyces pombe|...    25   8.5  
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc...    25   8.5  

>SPCC1322.14c |vtc4||vacuolar transporter chaperone
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 721

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -3

Query: 465 TKNDQQHVFLSFSFKSLDQRYNTLT*NKQRLLDALRA 355
           T+ND      S SF+ LD+R N L  +K++  D+  A
Sbjct: 534 TRNDNSTFQTSDSFQELDERTNLLDISKRKGRDSFVA 570


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1957

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = -3

Query: 474 IKLTKNDQQHVFLSFSFKSLDQRYNTLT*NKQRLLDALRAT 352
           ++L +N+Q    L  SFK L++ +  L  N Q +   L+ T
Sbjct: 595 MQLKENEQNFSSLDTSFKKLNESHQELENNHQTITKQLKDT 635


>SPAC1B1.03c |kap95||karyopherin Kap95|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 863

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 10/39 (25%), Positives = 20/39 (51%)
 Frame = +2

Query: 446 CCWSFFVNLIHYHTITLYRHYLM*CTNFYTNVLAQVFRV 562
           CCW+F   + H+  +  ++  +M  T FY  ++  +  V
Sbjct: 470 CCWAFMNLVCHFAPVDNHQTSVM--TPFYEAIIGSLLHV 506


>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1233

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 300 KSLNLFITNLPTFNGKLIQYTHVLER 223
           KS +L    L  F+  LIQYTH+  +
Sbjct: 271 KSFSLHFFALQFFSTSLIQYTHICRK 296


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,452,212
Number of Sequences: 5004
Number of extensions: 50665
Number of successful extensions: 112
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)