Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_G09
(456 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_1125 - 8920590-8924372 30 1.0
07_01_0129 - 959600-959625,960100-961428,961585-961657,962185-96... 29 1.3
10_06_0050 - 10072226-10072606 29 1.8
01_06_0167 + 27152535-27152570,27152760-27152853,27153632-271537... 29 1.8
02_04_0448 - 23001579-23001683,23001783-23002382,23002479-230026... 29 2.3
12_02_1166 + 26643045-26644078,26644238-26644322,26646800-26646937 28 4.1
10_08_1037 - 22477358-22478752 27 5.4
10_06_0179 - 11508235-11508245,11508555-11508942 27 5.4
02_04_0021 + 18975992-18976408 27 7.2
01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008 27 7.2
09_06_0125 - 21011757-21012428 27 9.5
07_01_0516 - 3850252-3852870 27 9.5
02_02_0011 + 6083431-6085541,6086659-6086779,6087188-6087247,608... 27 9.5
>01_01_1125 - 8920590-8924372
Length = 1260
Score = 29.9 bits (64), Expect = 1.0
Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = +3
Query: 126 THKPLLPVPPSSRIPLASG-PSPPFALFIVVKL 221
+H P PP S +PLA G P PP L +VKL
Sbjct: 158 SHAAAAPPPPPSAMPLAGGEPRPPPPLPSLVKL 190
>07_01_0129 -
959600-959625,960100-961428,961585-961657,962185-962226
Length = 489
Score = 29.5 bits (63), Expect = 1.3
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -3
Query: 88 YILQRGSARIGYIHYNCSTNFDLVPNSCS 2
Y + G I + H NC+ N D VPN+C+
Sbjct: 456 YKICSGQNNIVHCHTNCADNEDEVPNACN 484
>10_06_0050 - 10072226-10072606
Length = 126
Score = 29.1 bits (62), Expect = 1.8
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +3
Query: 105 GCALTTQTHKPLLPVPPS 158
GCA+T T KP+ P PPS
Sbjct: 20 GCAVTNCTGKPVAPTPPS 37
>01_06_0167 +
27152535-27152570,27152760-27152853,27153632-27153738,
27153877-27153963
Length = 107
Score = 29.1 bits (62), Expect = 1.8
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = +3
Query: 273 SAQCTNCKYILCRGRIRSCPRFCRNYKLFLVYVIMIDT 386
S++C C +I+ +G++ SC NY+ + + DT
Sbjct: 57 SSRCYRCIHIVPKGKLHSCMALLFNYRFYRKLSVSPDT 94
>02_04_0448 -
23001579-23001683,23001783-23002382,23002479-23002628,
23002788-23003015,23003188-23003302,23003392-23004659,
23006621-23006692
Length = 845
Score = 28.7 bits (61), Expect = 2.3
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = +3
Query: 123 QTHKPLLPVPPSSRIPLASGPSPPF 197
Q H PL PP P++ GPSP F
Sbjct: 372 QPHAPLSRPPPPMPAPMSYGPSPHF 396
>12_02_1166 + 26643045-26644078,26644238-26644322,26646800-26646937
Length = 418
Score = 27.9 bits (59), Expect = 4.1
Identities = 13/23 (56%), Positives = 13/23 (56%)
Frame = +3
Query: 123 QTHKPLLPVPPSSRIPLASGPSP 191
Q KP LP PPS AS PSP
Sbjct: 40 QEQKPFLPAPPSPAPVPASPPSP 62
>10_08_1037 - 22477358-22478752
Length = 464
Score = 27.5 bits (58), Expect = 5.4
Identities = 13/21 (61%), Positives = 17/21 (80%), Gaps = 2/21 (9%)
Frame = +3
Query: 138 LLPVPPSSRIPLA--SGPSPP 194
LLP+P +SR+PLA S P+PP
Sbjct: 112 LLPLPCASRLPLAPPSTPTPP 132
>10_06_0179 - 11508235-11508245,11508555-11508942
Length = 132
Score = 27.5 bits (58), Expect = 5.4
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +3
Query: 141 LPVPPSSRIPLASGPSP 191
LP PP+++ P AS PSP
Sbjct: 45 LPPPPAAKAPTASAPSP 61
>02_04_0021 + 18975992-18976408
Length = 138
Score = 27.1 bits (57), Expect = 7.2
Identities = 16/44 (36%), Positives = 19/44 (43%), Gaps = 5/44 (11%)
Frame = +3
Query: 75 LCNI*CNKGG-----GCALTTQTHKPLLPVPPSSRIPLASGPSP 191
LC + CN+ CALT KP PP + P PSP
Sbjct: 77 LCVVSCNQNSIVCMVRCALTPPPPKPKPTPPPPAPTPKPPAPSP 120
>01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008
Length = 580
Score = 27.1 bits (57), Expect = 7.2
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +3
Query: 150 PPSSRIPLASGPSPPF 197
PPS +P SGP+PPF
Sbjct: 406 PPSPYMPPPSGPAPPF 421
>09_06_0125 - 21011757-21012428
Length = 223
Score = 26.6 bits (56), Expect = 9.5
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
Frame = +3
Query: 75 LCNI*CNKGGGCALTTQTHKPL---LPVPPSSRIPLASGPSPP 194
+CN+ + GG + +PL P PP R P + P PP
Sbjct: 145 ICNVSGHCLGGMKFSVAVGEPLPPPSPPPPPPRAPFLAPPPPP 187
>07_01_0516 - 3850252-3852870
Length = 872
Score = 26.6 bits (56), Expect = 9.5
Identities = 13/23 (56%), Positives = 14/23 (60%)
Frame = +3
Query: 126 THKPLLPVPPSSRIPLASGPSPP 194
T +PL P PP P A GPSPP
Sbjct: 22 TSRPLPPPPPPP--PPAHGPSPP 42
>02_02_0011 + 6083431-6085541,6086659-6086779,6087188-6087247,
6087354-6088391,6089733-6089925,6090326-6090375,
6090470-6090744,6091114-6091180,6091189-6091278,
6091301-6091381,6091435-6091593
Length = 1414
Score = 26.6 bits (56), Expect = 9.5
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +3
Query: 114 LTTQTHKPLLPVPPSSRIPLASGPSPP 194
+T Q LPVPP+ + PL P PP
Sbjct: 977 VTQQQPTRQLPVPPTPQQPLPPPPPPP 1003
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,473,384
Number of Sequences: 37544
Number of extensions: 215024
Number of successful extensions: 823
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 767
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 818
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 895500300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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