Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_G09
         (456 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z71266-1|CAA95839.1|  945|Caenorhabditis elegans Hypothetical pr...    27   4.9  
Z96047-4|CAB09414.1|  796|Caenorhabditis elegans Hypothetical pr...    27   6.5  
AF043704-2|AAX88816.1|  407|Caenorhabditis elegans Prion-like-(q...    27   6.5  
Z81489-9|CAE17759.1|  326|Caenorhabditis elegans Hypothetical pr...    27   8.6  
Z77652-7|CAB01119.1|  341|Caenorhabditis elegans Hypothetical pr...    27   8.6  
Z74043-7|CAA98539.2|  705|Caenorhabditis elegans Hypothetical pr...    27   8.6  

>Z71266-1|CAA95839.1|  945|Caenorhabditis elegans Hypothetical
           protein R06C7.1 protein.
          Length = 945

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +3

Query: 123 QTHKPLLPVPPSSRIPLASGPSPP 194
           Q H P+ P+PP +  P A  P PP
Sbjct: 7   QPHPPMPPMPPVTAPPGAMTPMPP 30


>Z96047-4|CAB09414.1|  796|Caenorhabditis elegans Hypothetical
           protein DY3.5 protein.
          Length = 796

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +3

Query: 132 KPLLPVPPSSRIPLASGPSPP 194
           +P+ PVPP S   +  GP PP
Sbjct: 603 RPVQPVPPMSVATVTRGPPPP 623


>AF043704-2|AAX88816.1|  407|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 72
           protein.
          Length = 407

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = +3

Query: 111 ALTTQTHKPLLPVPPSSRIPLASGPSPP 194
           AL+T T        P S +P  SGPSPP
Sbjct: 329 ALSTPTSTISASPSPPSPLPTTSGPSPP 356


>Z81489-9|CAE17759.1|  326|Caenorhabditis elegans Hypothetical
           protein C55A1.12 protein.
          Length = 326

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +1

Query: 241 CKFSITRMPYRALNVQIVNIYYV 309
           CKF I   P +ALN+    I YV
Sbjct: 87  CKFKIFNFPLKALNISTFYIAYV 109


>Z77652-7|CAB01119.1|  341|Caenorhabditis elegans Hypothetical
           protein C06B3.10 protein.
          Length = 341

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 9/33 (27%), Positives = 19/33 (57%)
 Frame = +3

Query: 291 CKYILCRGRIRSCPRFCRNYKLFLVYVIMIDTY 389
           C +IL    I+  P+   +YK+ ++Y+ + D +
Sbjct: 18  CNFILIILIIKKSPKTLGSYKILMIYIAIFDIF 50


>Z74043-7|CAA98539.2|  705|Caenorhabditis elegans Hypothetical
           protein T19B10.5 protein.
          Length = 705

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 12/19 (63%), Positives = 14/19 (73%), Gaps = 1/19 (5%)
 Frame = +3

Query: 120 TQTHKPLLPVPPS-SRIPL 173
           TQT KP+ PVPP  S IP+
Sbjct: 517 TQTEKPIAPVPPPISSIPV 535


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,542,490
Number of Sequences: 27780
Number of extensions: 173286
Number of successful extensions: 523
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 509
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 519
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 809909048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)