Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_G07
         (355 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    26   1.5  
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo...    26   2.0  
SPAC18B11.02c |||pseudouridylate synthase |Schizosaccharomyces p...    25   3.4  
SPBC1773.08c |||mannosyltransferase complex subunit |Schizosacch...    24   6.0  

>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 2685

 Score = 26.2 bits (55), Expect = 1.5
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = -2

Query: 306  KLTYTTNRLQYYEIYIIMITFTLYK 232
            ++ ++T+  QYY+I+ I+    LYK
Sbjct: 2118 RVVFSTDSSQYYDIFTIITDLLLYK 2142


>SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1616

 Score = 25.8 bits (54), Expect = 2.0
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -1

Query: 355  AVRGLFPRRASPLIAFEIDIHYEPFTIL*NIYNNDYFH 242
            A R  FP   SP+      I  + F+IL + YN+ Y H
Sbjct: 1484 AARNFFPSTESPVSNRRQRIAVDCFSILLDDYNSSYEH 1521


>SPAC18B11.02c |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 394

 Score = 25.0 bits (52), Expect = 3.4
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -2

Query: 87  TASPLRPHRVLTRDTQSRVKSRRE 16
           TASPL  +   T +T++  K+RR+
Sbjct: 305 TASPLLQYEWYTNETEAEAKARRD 328


>SPBC1773.08c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 391

 Score = 24.2 bits (50), Expect = 6.0
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -1

Query: 331 RASPLIAFEIDIHYEPF 281
           R  P +AF  DI Y+PF
Sbjct: 168 RVEPDVAFTCDISYDPF 184


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,188,441
Number of Sequences: 5004
Number of extensions: 17927
Number of successful extensions: 30
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 105935336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)