Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_G07
         (355 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0995 + 26704029-26704107,26704543-26704595,26704907-267051...    29   0.79 
10_05_0107 - 9223680-9223980,9224340-9224715,9225722-9225817,922...    28   2.4  
08_02_0124 - 12823791-12824213                                         27   5.6  
06_03_0252 + 18747333-18747448,18747668-18747734,18747938-187480...    27   5.6  
11_02_0041 - 7669692-7670312                                           26   7.4  

>06_03_0995 +
           26704029-26704107,26704543-26704595,26704907-26705122,
           26705328-26705411,26705498-26705572,26705711-26705794,
           26706179-26706268,26707463-26707558,26707655-26707726,
           26708500-26708604,26708804-26708845
          Length = 331

 Score = 29.5 bits (63), Expect = 0.79
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = -1

Query: 322 PLIAFEIDIHYEPFTIL*NIYNNDYFHFIQIHQRVLRVPITAAQRL 185
           P   + ID H  P T+  N+YN    H I     ++ V + A + L
Sbjct: 86  PTTGYHIDQHLVPLTLRDNLYNLQLKHMIHQALSIVSVSLLAVENL 131


>10_05_0107 -
           9223680-9223980,9224340-9224715,9225722-9225817,
           9225870-9225930
          Length = 277

 Score = 27.9 bits (59), Expect = 2.4
 Identities = 17/46 (36%), Positives = 25/46 (54%)
 Frame = +2

Query: 26  DLTRDCVSRVNTRCGRRGDAVLALSRKGGALESSGKRERAGEANLV 163
           +L R C + V++  GR G      +R+G ALE  G  +R G+  LV
Sbjct: 84  ELGRWCTASVSSSTGRGG------ARRGPALEGGGGHQRQGQQVLV 123


>08_02_0124 - 12823791-12824213
          Length = 140

 Score = 26.6 bits (56), Expect = 5.6
 Identities = 14/26 (53%), Positives = 18/26 (69%)
 Frame = +2

Query: 77  GDAVLALSRKGGALESSGKRERAGEA 154
           G+AV A +R+G  +ES  KRER G A
Sbjct: 12  GEAVRAAAREG--MESRAKREREGRA 35


>06_03_0252 +
           18747333-18747448,18747668-18747734,18747938-18748068,
           18748098-18748209
          Length = 141

 Score = 26.6 bits (56), Expect = 5.6
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +2

Query: 68  GRRGDAVLALSRKGGALESSGKRERA 145
           GR G  VL  SR GG  +   K+ERA
Sbjct: 74  GRGGVRVLRRSRAGGGEQDDAKKERA 99


>11_02_0041 - 7669692-7670312
          Length = 206

 Score = 26.2 bits (55), Expect = 7.4
 Identities = 16/49 (32%), Positives = 22/49 (44%)
 Frame = +2

Query: 8   AICSRRDLTRDCVSRVNTRCGRRGDAVLALSRKGGALESSGKRERAGEA 154
           A C  ++     V  V+    RRGD  + +      L  SG+R RAG A
Sbjct: 72  ARCDWKETPEAHVVTVDVPGVRRGDVRVEVDEASRVLRVSGERRRAGAA 120


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,707,118
Number of Sequences: 37544
Number of extensions: 116186
Number of successful extensions: 273
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 270
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 273
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 530315984
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)