Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_G06
(518 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 131 5e-32
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 66 3e-12
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 58 1e-09
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 56 4e-09
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 54 1e-08
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 52 4e-08
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 51 9e-08
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 51 9e-08
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 49 4e-07
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 48 1e-06
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 45 8e-06
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 45 8e-06
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 44 1e-05
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 44 1e-05
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 44 1e-05
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 44 2e-05
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 43 2e-05
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos... 43 2e-05
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 43 3e-05
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 40 3e-04
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 40 3e-04
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 39 4e-04
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 38 7e-04
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 38 9e-04
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 38 9e-04
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 38 9e-04
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 38 0.001
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo... 35 0.006
SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog |Schi... 35 0.008
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy... 34 0.011
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 33 0.034
SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 32 0.059
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 32 0.059
SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces ... 32 0.059
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 31 0.10
SPAC2G11.03c |vps45||vacuolar sorting protein Vps 45|Schizosacch... 31 0.14
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 30 0.18
SPCC550.02c |cwf5|ecm2|RNA-binding protein Cwf5|Schizosaccharomy... 29 0.32
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 29 0.55
SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom... 29 0.55
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 28 0.96
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p... 27 1.3
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 27 1.7
SPAC1952.05 |gcn5||histone acetyltransferase Gcn5|Schizosaccharo... 26 2.9
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 26 3.9
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 131 bits (317), Expect = 5e-32
Identities = 60/147 (40%), Positives = 95/147 (64%), Gaps = 6/147 (4%)
Frame = +3
Query: 96 QDNSAE-APGRDDDRKLFVGGLSWETSDKELRDHFSAYGEIESINVKTDPNTGRSRGFAF 272
+DN+ E +P +D K+F+GGL+WET+D LRD+F +GE+ V D TGRSRGF F
Sbjct: 149 EDNAEETSPFNREDGKMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGF 208
Query: 273 IVFKAPDSIDKVMAAGEHTINSKKVDPKKAKARH-----GKIFVGGLSSEISDDEIKNFF 437
+ FK P +++VM+ EH ++ K +DPK+A R K+FVGG+ + +++E +NFF
Sbjct: 209 LTFKNPKCVNEVMSK-EHHLDGKIIDPKRAIPREEQEKTAKMFVGGVPGDCTEEEFRNFF 267
Query: 438 SNFGNIIEVEMPFDKTKNQRKGFCFIT 518
+ FG +++ + DK + +GF F+T
Sbjct: 268 NQFGRVLDATLMMDKDTGRPRGFGFVT 294
Score = 61.3 bits (142), Expect = 8e-11
Identities = 29/105 (27%), Positives = 56/105 (53%), Gaps = 2/105 (1%)
Frame = +3
Query: 54 NQLNGNSEHGGGDGQDNSAEAPGRDDDR--KLFVGGLSWETSDKELRDHFSAYGEIESIN 227
N++ H G D P + ++ K+FVGG+ + +++E R+ F+ +G +
Sbjct: 218 NEVMSKEHHLDGKIIDPKRAIPREEQEKTAKMFVGGVPGDCTEEEFRNFFNQFGRVLDAT 277
Query: 228 VKTDPNTGRSRGFAFIVFKAPDSIDKVMAAGEHTINSKKVDPKKA 362
+ D +TGR RGF F+ ++ +++ M+ TI+ K V+ K+A
Sbjct: 278 LMMDKDTGRPRGFGFVTYENESAVEATMSQPYITIHGKPVEVKRA 322
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 66.1 bits (154), Expect = 3e-12
Identities = 46/159 (28%), Positives = 75/159 (47%), Gaps = 25/159 (15%)
Frame = +3
Query: 117 PGRDDDRK--LFVGGLSWETSDKELRDHFSAYGEIESINVKTDPNTGRSRGFAFIVFKAP 290
P +D + +FVG LSW D+ L F YG I V D +GRS+G+ ++ F+ P
Sbjct: 255 PSQDSNETCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETP 314
Query: 291 DSIDKVMAA-GEHTINSKKV-----DPKK------AKARHGK-----------IFVGGLS 401
++ +AA G I+ + V +P+ A+ R G +FVG LS
Sbjct: 315 EAAKAAVAANGTKEIDGRMVNLDLSNPRPANPQPYAQQRAGNFGDQLSEPSDTVFVGNLS 374
Query: 402 SEISDDEIKNFFSNFGNIIEVEMPFDKTKNQRKGFCFIT 518
++D++ F G+I + +P D + KGF ++T
Sbjct: 375 FNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVT 413
Score = 54.0 bits (124), Expect = 1e-08
Identities = 24/64 (37%), Positives = 37/64 (57%)
Frame = +3
Query: 141 LFVGGLSWETSDKELRDHFSAYGEIESINVKTDPNTGRSRGFAFIVFKAPDSIDKVMAAG 320
+FVG LS+ ++ +L F G+I+SI + TDP +GR +GF ++ F DS K +
Sbjct: 368 VFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCVEMN 427
Query: 321 EHTI 332
H I
Sbjct: 428 GHFI 431
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 57.6 bits (133), Expect = 1e-09
Identities = 31/99 (31%), Positives = 53/99 (53%), Gaps = 7/99 (7%)
Frame = +3
Query: 105 SAEAPGRDDDRKLFVGGLSWETSDKELRDHFSAYGEIESINVKTDPNTGRSRGFAFIVFK 284
S ++ ++ LFVG L +ET+D +L++HF G+I + + T +TG+ +GF F+ F
Sbjct: 218 SIQSSKKEPSSILFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDFP 277
Query: 285 APDSIDKVMAAGEHT-------INSKKVDPKKAKARHGK 380
D+ K M G ++ SK++ K AR G+
Sbjct: 278 DIDTCMKAMELGHNSWRLEYGEDRSKRMRNKSPMARSGR 316
Score = 31.5 bits (68), Expect = 0.078
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +3
Query: 381 IFVGGLSSEISDDEIKNFFSNFGNIIEVEMPFDKTKNQRKGFCFI 515
+FVG L E +D ++K F G I V + + + KGF F+
Sbjct: 230 LFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFV 274
>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 233
Score = 55.6 bits (128), Expect = 4e-09
Identities = 34/97 (35%), Positives = 54/97 (55%), Gaps = 5/97 (5%)
Frame = +3
Query: 105 SAEAPGRDDDRK--LFVGGLSWETSDKELRDHFSAYGEIESINVKTDPNTGRSRGFAFIV 278
S G+++DRK LFVG L ++S + L+ HF G++ S+ + TD +GR +G+AF+
Sbjct: 80 SKRQKGKNNDRKVILFVGNLPKDSSVETLQLHFKRAGQVPSVRIPTDKTSGRQKGYAFVE 139
Query: 279 FKAP--DSIDKVMAAGEHTI-NSKKVDPKKAKARHGK 380
F P D I K + HTI +K++ + GK
Sbjct: 140 FINPKTDVISKALKF-HHTIYKERKINIELTAGGGGK 175
Score = 39.1 bits (87), Expect = 4e-04
Identities = 20/72 (27%), Positives = 38/72 (52%), Gaps = 7/72 (9%)
Frame = +3
Query: 321 EHTINSKKVDPKKAKARHGK-------IFVGGLSSEISDDEIKNFFSNFGNIIEVEMPFD 479
+H++++ K+K + GK +FVG L + S + ++ F G + V +P D
Sbjct: 67 KHSVSNPPHKTLKSKRQKGKNNDRKVILFVGNLPKDSSVETLQLHFKRAGQVPSVRIPTD 126
Query: 480 KTKNQRKGFCFI 515
KT ++KG+ F+
Sbjct: 127 KTSGRQKGYAFV 138
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 54.0 bits (124), Expect = 1e-08
Identities = 39/133 (29%), Positives = 64/133 (48%), Gaps = 8/133 (6%)
Frame = +3
Query: 141 LFVGGLSWETSDKELRDHFSAYGEIESINVKTDPNTGRSRGFAFIVF-------KAPDSI 299
L+VG L ++ L + F++ G + SI V D T RS G+A++ F KA D +
Sbjct: 82 LYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDEL 141
Query: 300 DKVMAAGEH-TINSKKVDPKKAKARHGKIFVGGLSSEISDDEIKNFFSNFGNIIEVEMPF 476
+ + G I + DP K G +F+ L I + + + FS FG I+ ++
Sbjct: 142 NYTLIKGRPCRIMWSQRDPSLRKMGTGNVFIKNLDPAIDNKALHDTFSAFGKILSCKVAV 201
Query: 477 DKTKNQRKGFCFI 515
D+ N KG+ F+
Sbjct: 202 DELGN-AKGYGFV 213
Score = 47.2 bits (107), Expect = 1e-06
Identities = 21/57 (36%), Positives = 33/57 (57%)
Frame = +3
Query: 141 LFVGGLSWETSDKELRDHFSAYGEIESINVKTDPNTGRSRGFAFIVFKAPDSIDKVM 311
LF+ L E D+ L+ FSA+G I S + TD G+S+GF F+ + P+ +K +
Sbjct: 366 LFIKNLQDEVDDERLKAEFSAFGTITSAKIMTD-EQGKSKGFGFVCYTTPEEANKAV 421
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 52.4 bits (120), Expect = 4e-08
Identities = 26/93 (27%), Positives = 47/93 (50%), Gaps = 6/93 (6%)
Frame = +3
Query: 99 DNSAEAPGRD----DDRKLFVGGLSWETSDKELRDHFSAYGEIESINVKTDPNTGRSRGF 266
DN EA D D + ++VG + + + +EL+ HF++ G + + + D TG +GF
Sbjct: 39 DNETEALRNDKESIDAQSVYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGF 98
Query: 267 AFIVFKAPDSIDKVMAAGEHTINSK--KVDPKK 359
A+I F P + + ++ + KV PK+
Sbjct: 99 AYIEFSEPSLVPNALLLNGSMLHERPLKVTPKR 131
Score = 32.3 bits (70), Expect = 0.045
Identities = 12/45 (26%), Positives = 27/45 (60%)
Frame = +3
Query: 381 IFVGGLSSEISDDEIKNFFSNFGNIIEVEMPFDKTKNQRKGFCFI 515
++VG + ++ +E+++ F++ G++ V + DK KGF +I
Sbjct: 57 VYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYI 101
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 51.2 bits (117), Expect = 9e-08
Identities = 24/75 (32%), Positives = 40/75 (53%)
Frame = +3
Query: 99 DNSAEAPGRDDDRKLFVGGLSWETSDKELRDHFSAYGEIESINVKTDPNTGRSRGFAFIV 278
D+ + +D R +FVG L++E ++ L +F G I+ + + DP T +GFA+I
Sbjct: 258 DSVSHPMPQDTKRCVFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQ 317
Query: 279 FKAPDSIDKVMAAGE 323
FK +DK + E
Sbjct: 318 FKDTMGVDKALLLNE 332
Score = 32.7 bits (71), Expect = 0.034
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = +3
Query: 381 IFVGGLSSEISDDEIKNFFSNFGNIIEVEMPFDKTKNQRKGFCFI 515
+FVG L+ E ++ + +F + G+I V + D N KGF +I
Sbjct: 272 VFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYI 316
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 51.2 bits (117), Expect = 9e-08
Identities = 26/67 (38%), Positives = 38/67 (56%)
Frame = +3
Query: 81 GGGDGQDNSAEAPGRDDDRKLFVGGLSWETSDKELRDHFSAYGEIESINVKTDPNTGRSR 260
G G +S RDD L V LS +T ++ELRD F +G I+ + + D TGR++
Sbjct: 184 GSGRESGDSMFKRERDDSATLRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAK 243
Query: 261 GFAFIVF 281
GFAF+ +
Sbjct: 244 GFAFVSY 250
Score = 35.9 bits (79), Expect = 0.004
Identities = 16/55 (29%), Positives = 29/55 (52%)
Frame = +3
Query: 354 KKAKARHGKIFVGGLSSEISDDEIKNFFSNFGNIIEVEMPFDKTKNQRKGFCFIT 518
K+ + + V LS + ++E+++ F FG I V + DK + KGF F++
Sbjct: 195 KRERDDSATLRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVS 249
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 49.2 bits (112), Expect = 4e-07
Identities = 42/180 (23%), Positives = 79/180 (43%), Gaps = 20/180 (11%)
Frame = +3
Query: 36 QDITTDNQLNGNSEHGGGDGQDNSAEAPGRDDDRKLFVGGLSWETSDKELRDHFSAYGEI 215
+D+ D++ + + +S + D R +FV L+ + +EL D F G +
Sbjct: 207 EDLRDDDRSHERKRSRSRPRERSSKLSEEERDRRTVFVSQLANRLTSRELYDFFEQAGPV 266
Query: 216 ESINVKTDPNTGRSRGFAFIVFKAPDSIDKVMA-AGEHTINSKKV-----DPKKAKARHG 377
+ D +GRS+G A++ F DS+ +A +G+ + + K KAR
Sbjct: 267 RDAQIVRDKISGRSKGVAYVEFCHEDSVQAAIALSGKRLLGLPVIVQLTEAEKNRKAREA 326
Query: 378 --------------KIFVGGLSSEISDDEIKNFFSNFGNIIEVEMPFDKTKNQRKGFCFI 515
++ V + ++D+++K F FG+I V + D +N+ KGF +I
Sbjct: 327 AELARAASAEIPFHRLCVSNIHFNLTDEDVKAIFEPFGDIEFVHLQRD-DQNRSKGFGYI 385
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 47.6 bits (108), Expect = 1e-06
Identities = 20/53 (37%), Positives = 34/53 (64%)
Frame = +3
Query: 126 DDDRKLFVGGLSWETSDKELRDHFSAYGEIESINVKTDPNTGRSRGFAFIVFK 284
D + +F+ LS++T + ++ F+ YG IE I V + TG+S G+AF+VF+
Sbjct: 97 DPYKTMFLSRLSYDTKESDIEREFTRYGPIERIRVVRNKVTGKSMGYAFVVFE 149
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 44.8 bits (101), Expect = 8e-06
Identities = 25/74 (33%), Positives = 41/74 (55%)
Frame = +3
Query: 129 DDRKLFVGGLSWETSDKELRDHFSAYGEIESINVKTDPNTGRSRGFAFIVFKAPDSIDKV 308
D +++G L ++ ++ ++ FS +GE IN+ D TG+S+GFAF+ K D V
Sbjct: 29 DSAYIYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFL--KYEDQRSTV 86
Query: 309 MAAGEHTINSKKVD 350
+A T N K +D
Sbjct: 87 LAVDNMT-NVKLLD 99
Score = 39.9 bits (89), Expect = 2e-04
Identities = 15/45 (33%), Positives = 28/45 (62%)
Frame = +3
Query: 381 IFVGGLSSEISDDEIKNFFSNFGNIIEVEMPFDKTKNQRKGFCFI 515
I++G L ++++D+I FS FG +++ + DK + KGF F+
Sbjct: 33 IYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFL 77
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 44.8 bits (101), Expect = 8e-06
Identities = 30/100 (30%), Positives = 47/100 (47%), Gaps = 1/100 (1%)
Frame = +3
Query: 75 EHGGGDGQDNSAEAPGRDDDRKLFVGGLSWETSDKELRDHFSAYGE-IESINVKTDPNTG 251
E G G G A + VG LS++ ++ +L D F GE + SI + DP T
Sbjct: 74 EGGMGSGYQRDAIPIPSEPPFTAHVGNLSFDLTENDLGDFF---GEGVTSIRLVIDPLTE 130
Query: 252 RSRGFAFIVFKAPDSIDKVMAAGEHTINSKKVDPKKAKAR 371
RSRGF ++ F+ D++ +A + + V A+ R
Sbjct: 131 RSRGFGYVEFETADTLSAALALSGEDLMGRPVRITVAEPR 170
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 44.4 bits (100), Expect = 1e-05
Identities = 17/46 (36%), Positives = 29/46 (63%)
Frame = +3
Query: 378 KIFVGGLSSEISDDEIKNFFSNFGNIIEVEMPFDKTKNQRKGFCFI 515
++F+ L+ ++D++K+ F FG + +V MP DK N KGF +I
Sbjct: 324 RLFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYI 369
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 44.4 bits (100), Expect = 1e-05
Identities = 18/41 (43%), Positives = 28/41 (68%)
Frame = +3
Query: 351 PKKAKARHGKIFVGGLSSEISDDEIKNFFSNFGNIIEVEMP 473
P+ A + +FVGGLS +S++E+K F NFG I+ V++P
Sbjct: 295 PQFADTANSTVFVGGLSKFVSEEELKYLFQNFGEIVYVKIP 335
Score = 37.5 bits (83), Expect = 0.001
Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 1/93 (1%)
Frame = +3
Query: 48 TDNQLNGNSEHGGGDGQDNSAEAPGRDDDRKLFVGGLSWETSDKELRDHF-SAYGEIESI 224
T++ N GGG + + ++A + +FVG LS ++ ++ F S Y +S
Sbjct: 161 TNHLFKLNWASGGGLREKSISKA----SEYSIFVGDLSPNVNEFDVYSLFASRYNSCKSA 216
Query: 225 NVKTDPNTGRSRGFAFIVFKAPDSIDKVMAAGE 323
+ TDP T SRG+ F+ F D D+ A E
Sbjct: 217 KIMTDPQTNVSRGYGFVRF--TDENDQKSALAE 247
Score = 30.7 bits (66), Expect = 0.14
Identities = 17/37 (45%), Positives = 23/37 (62%)
Frame = +3
Query: 141 LFVGGLSWETSDKELRDHFSAYGEIESINVKTDPNTG 251
+FVGGLS S++EL+ F +GEI + VK P G
Sbjct: 305 VFVGGLSKFVSEEELKYLFQNFGEI--VYVKIPPGKG 339
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 44.0 bits (99), Expect = 1e-05
Identities = 23/60 (38%), Positives = 35/60 (58%), Gaps = 4/60 (6%)
Frame = +3
Query: 141 LFVGGLSWETSDKELRDHFSAYGEIESINVKTDPNTGRSRGFAFIVFK----APDSIDKV 308
++VG L W TSD+ L D F+ G + + +P TGRS+GF + F+ A SI+K+
Sbjct: 282 IYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEP-TGRSKGFGVVQFENENDAASSIEKL 340
Score = 31.9 bits (69), Expect = 0.059
Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = +3
Query: 318 GEHTINSKKV-DPKKAKARHGKIFVGGLSSEISDDEIKNFFSNFGNIIEVEM 470
GEHT + + +K + +++VG LS ++ E+K F GN++ E+
Sbjct: 46 GEHTERDPHLGNGQKYTQQERRVYVGNLSYQVRWFELKEFMGQVGNVLNCEI 97
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 43.6 bits (98), Expect = 2e-05
Identities = 21/78 (26%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Frame = +3
Query: 51 DNQLNGNSEHGGGDGQDNSAEAPGRDD-DRKLFVGGLSWETSDKELRDHFSAYGEIESIN 227
+++++ N+E D ++ + G ++ LFV G++ + EL+ FS +G + +
Sbjct: 72 EDEVDPNNESTALDKKEPQSAPEGSENLGNDLFVSGIASRMQEDELQQIFSKFGTVTHVR 131
Query: 228 VKTDPNTGRSRGFAFIVF 281
+ +P T SRGF F+ F
Sbjct: 132 IMREPVTKASRGFGFLSF 149
Score = 39.1 bits (87), Expect = 4e-04
Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Frame = +3
Query: 300 DKVMAAGEHTINSKKVD---PKKAKARHGKIFVGGLSSEISDDEIKNFFSNFGNIIEVEM 470
D+V E T KK P+ ++ +FV G++S + +DE++ FS FG + V +
Sbjct: 73 DEVDPNNESTALDKKEPQSAPEGSENLGNDLFVSGIASRMQEDELQQIFSKFGTVTHVRI 132
Query: 471 PFDKTKNQRKGFCFIT 518
+ +GF F++
Sbjct: 133 MREPVTKASRGFGFLS 148
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 43.2 bits (97), Expect = 2e-05
Identities = 19/47 (40%), Positives = 29/47 (61%)
Frame = +3
Query: 141 LFVGGLSWETSDKELRDHFSAYGEIESINVKTDPNTGRSRGFAFIVF 281
LFV L+++T +L + FS G I+ V T+P TG +RG+ F+ F
Sbjct: 7 LFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTF 53
Score = 39.5 bits (88), Expect = 3e-04
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Frame = +3
Query: 75 EHGGGDGQDNSAEAPGRDDDR---KLFVGGLSWETSDKELRDHFSAYGEIESINVKTDPN 245
+ G NS RD++ +FV L +E +++EL +HF +G + + DP
Sbjct: 254 DSGDSSSDKNSINHEIRDNEGLEDTVFVRNLLFECTEQELYNHFRQFGPLAYAKLVKDPA 313
Query: 246 TGRSRGFAFIVFK 284
T RS G FI F+
Sbjct: 314 TDRSLGRGFIKFR 326
Score = 31.1 bits (67), Expect = 0.10
Identities = 13/46 (28%), Positives = 25/46 (54%)
Frame = +3
Query: 381 IFVGGLSSEISDDEIKNFFSNFGNIIEVEMPFDKTKNQRKGFCFIT 518
+FV L+ + D++ NFFS+ G I + + + +G+ F+T
Sbjct: 7 LFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVT 52
Score = 26.2 bits (55), Expect = 2.9
Identities = 16/76 (21%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Frame = +3
Query: 294 SIDKVMAAGEHTINSKKVDP--KKAKARHGKIFVGGLSSEISDDEIKNFFSNFGNIIEVE 467
++D V +G+ + + ++ + + +FV L E ++ E+ N F FG + +
Sbjct: 248 NVDDVEDSGDSSSDKNSINHEIRDNEGLEDTVFVRNLLFECTEQELYNHFRQFGPLAYAK 307
Query: 468 MPFDKTKNQRKGFCFI 515
+ D ++ G FI
Sbjct: 308 LVKDPATDRSLGRGFI 323
>SPCC306.04c |set1||histone lysine methyltransferase
Set1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 920
Score = 43.2 bits (97), Expect = 2e-05
Identities = 21/67 (31%), Positives = 37/67 (55%)
Frame = +3
Query: 99 DNSAEAPGRDDDRKLFVGGLSWETSDKELRDHFSAYGEIESINVKTDPNTGRSRGFAFIV 278
D + + G + ++FV +S + ++LR HF ++GE+ +++K +P TG S G I
Sbjct: 82 DYNENSLGPEPPTQVFVSNISPLVTSEQLRYHFKSFGEVFDLDLKLNPYTGTSLGLCCIS 141
Query: 279 FKAPDSI 299
F SI
Sbjct: 142 FDKRSSI 148
Score = 29.9 bits (64), Expect = 0.24
Identities = 9/47 (19%), Positives = 26/47 (55%)
Frame = +3
Query: 378 KIFVGGLSSEISDDEIKNFFSNFGNIIEVEMPFDKTKNQRKGFCFIT 518
++FV +S ++ ++++ F +FG + ++++ + G C I+
Sbjct: 95 QVFVSNISPLVTSEQLRYHFKSFGEVFDLDLKLNPYTGTSLGLCCIS 141
>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ctf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 42.7 bits (96), Expect = 3e-05
Identities = 20/75 (26%), Positives = 42/75 (56%)
Frame = +3
Query: 141 LFVGGLSWETSDKELRDHFSAYGEIESINVKTDPNTGRSRGFAFIVFKAPDSIDKVMAAG 320
+FVG + ++ S++++ + F+ G +++ + DP TG +G+ F F DS MA
Sbjct: 9 VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFF--DSETTAMAV- 65
Query: 321 EHTINSKKVDPKKAK 365
+N+ ++ P+K +
Sbjct: 66 -RKLNNSELGPRKIR 79
Score = 27.5 bits (58), Expect = 1.3
Identities = 10/44 (22%), Positives = 22/44 (50%)
Frame = +3
Query: 381 IFVGGLSSEISDDEIKNFFSNFGNIIEVEMPFDKTKNQRKGFCF 512
+FVG + ++S+ ++ F+ G + ++ D KG+ F
Sbjct: 9 VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGF 52
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 39.5 bits (88), Expect = 3e-04
Identities = 21/56 (37%), Positives = 29/56 (51%)
Frame = +3
Query: 138 KLFVGGLSWETSDKELRDHFSAYGEIESINVKTDPNTGRSRGFAFIVFKAPDSIDK 305
+LFVG L + +D+ L FS Y + V D G++RGF F+ FK D K
Sbjct: 31 RLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRD-REGKTRGFGFVSFKDSDQFLK 85
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 39.5 bits (88), Expect = 3e-04
Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Frame = +3
Query: 141 LFVGGLSWETSDKELRDHFSAYGE-IESINVKTDPNTGRSRGFAFIVFKAPDSID-KVMA 314
LFVG L ++ L D FSA G+ +++ V D N GRS+G+ F+ + + ++ D + A
Sbjct: 101 LFVGNLDPLVDERVLYDTFSALGQLVKAPQVARDEN-GRSKGYGFVSYDSFETADAAIEA 159
Query: 315 AGEHTINSKKVDPKKAKARHGK 380
+ +K + A R GK
Sbjct: 160 MNNQFLMNKPITVSYAFKREGK 181
Score = 33.9 bits (74), Expect = 0.015
Identities = 26/140 (18%), Positives = 55/140 (39%), Gaps = 8/140 (5%)
Frame = +3
Query: 123 RDDDRKLFVGGLSWETSDKELRDHFSAYGEIESINVKTDPNTGRSRGFAFIVFKAPDSID 302
R+ D +++G L + +D L + G + +I++ D GF F F ++
Sbjct: 7 RNQDATIYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQDVE 66
Query: 303 KV-MAAGEHTINSKKVDPKKAKARHG-------KIFVGGLSSEISDDEIKNFFSNFGNII 458
+ + K + +A G +FVG L + + + + FS G ++
Sbjct: 67 YACQILNQVKLFGKPIRVNRASQDRGVNTLIGANLFVGNLDPLVDERVLYDTFSALGQLV 126
Query: 459 EVEMPFDKTKNQRKGFCFIT 518
+ + KG+ F++
Sbjct: 127 KAPQVARDENGRSKGYGFVS 146
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 39.1 bits (87), Expect = 4e-04
Identities = 26/109 (23%), Positives = 47/109 (43%), Gaps = 4/109 (3%)
Frame = +3
Query: 45 TTDNQLNGNSEHGGGDGQDNSAEAPGRDDDRKLFVGGLSWETSDKELRDHFSAYGEIESI 224
T +Q+ + + + S + DD ++FVG LS T E+R F G + +
Sbjct: 14 TVQDQVEASVDAAVHASAEQSNTPAQQADDFRVFVGRLSTSTKKSEIRSLFETVGTVRKV 73
Query: 225 NVKTDPNTGRSR----GFAFIVFKAPDSIDKVMAAGEHTINSKKVDPKK 359
+ +R G AF+ F + +DK + T+N K +D ++
Sbjct: 74 TIPFRRVRRGTRLVPSGIAFVTFNNQEDVDKAI----ETLNGKTLDDRE 118
Score = 34.7 bits (76), Expect = 0.008
Identities = 20/80 (25%), Positives = 38/80 (47%), Gaps = 4/80 (5%)
Frame = +3
Query: 291 DSIDKVMAAGEHTINSKKVDPKKAKARHGKIFVGGLSSEISDDEIKNFFSNFGNIIEVEM 470
D ++ + A H + P + +A ++FVG LS+ EI++ F G + +V +
Sbjct: 17 DQVEASVDAAVHASAEQSNTPAQ-QADDFRVFVGRLSTSTKKSEIRSLFETVGTVRKVTI 75
Query: 471 PFDKTKNQRK----GFCFIT 518
PF + + + G F+T
Sbjct: 76 PFRRVRRGTRLVPSGIAFVT 95
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 38.3 bits (85), Expect = 7e-04
Identities = 14/34 (41%), Positives = 25/34 (73%)
Frame = +3
Query: 381 IFVGGLSSEISDDEIKNFFSNFGNIIEVEMPFDK 482
+FVGGL+S +S+ +++ F FG I+ +++PF K
Sbjct: 299 VFVGGLASNLSEKDLQVCFQPFGRILNIKIPFGK 332
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 37.9 bits (84), Expect = 9e-04
Identities = 34/133 (25%), Positives = 61/133 (45%), Gaps = 22/133 (16%)
Frame = +3
Query: 99 DNSAEAPGR--DDDRKLFVGGLSWETSDKELRDHFSAYGEIESI----------NVKTDP 242
++ PG+ D+ ++VG + SD+E+ HFS YG++ESI K P
Sbjct: 3 NSKLSVPGQYEDESSTIYVGNIDSRLSDEEIIKHFSKYGQVESIFRRLLDSFYPKEKAKP 62
Query: 243 NTGRSRG--FAFIVFKAPDSIDKV------MAAGEH--TINSKKVDPKKAKARHGKIFVG 392
G + F+ F +SI++V M G+ TI ++ V+P K + K
Sbjct: 63 FKPPKNGVQYGFVKFVNAESIEEVLKDAKGMTLGQRKLTIKARVVNPAKLTDKKFKPNDT 122
Query: 393 GLSSEISDDEIKN 431
+++ + + I+N
Sbjct: 123 SITANVFNPSIQN 135
Score = 35.9 bits (79), Expect = 0.004
Identities = 21/64 (32%), Positives = 34/64 (53%)
Frame = +3
Query: 168 TSDKELRDHFSAYGEIESINVKTDPNTGRSRGFAFIVFKAPDSIDKVMAAGEHTINSKKV 347
T +L D FS +G I S + PN+G S+G+ F+ F+ I+ + A + T+N V
Sbjct: 395 TCKSQLEDLFSPFGSILSSMLACYPNSGISKGYGFVAFR---QIEAAVRA-KDTLNGMMV 450
Query: 348 DPKK 359
K+
Sbjct: 451 GKKR 454
Score = 33.5 bits (73), Expect = 0.019
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = +3
Query: 333 NSKKVDPKKAKARHGKIFVGGLSSEISDDEIKNFFSNFGNI 455
NSK P + + I+VG + S +SD+EI FS +G +
Sbjct: 3 NSKLSVPGQYEDESSTIYVGNIDSRLSDEEIIKHFSKYGQV 43
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 37.9 bits (84), Expect = 9e-04
Identities = 17/65 (26%), Positives = 33/65 (50%)
Frame = +3
Query: 321 EHTINSKKVDPKKAKARHGKIFVGGLSSEISDDEIKNFFSNFGNIIEVEMPFDKTKNQRK 500
E TI K + K + + G ++VG L + +++ +FS FG ++ + M ++ K
Sbjct: 87 EKTIKKKVSENKNLQKKKGVLYVGRLPHGFYEKQMRMYFSQFGPVLRLRMSRNRKTGSSK 146
Query: 501 GFCFI 515
+ FI
Sbjct: 147 HYAFI 151
Score = 37.9 bits (84), Expect = 9e-04
Identities = 20/62 (32%), Positives = 36/62 (58%)
Frame = +3
Query: 141 LFVGGLSWETSDKELRDHFSAYGEIESINVKTDPNTGRSRGFAFIVFKAPDSIDKVMAAG 320
L+VG L +K++R +FS +G + + + + TG S+ +AFI F++ D + V+A
Sbjct: 107 LYVGRLPHGFYEKQMRMYFSQFGPVLRLRMSRNRKTGSSKHYAFIEFESLD-VANVVAET 165
Query: 321 EH 326
H
Sbjct: 166 MH 167
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 37.9 bits (84), Expect = 9e-04
Identities = 16/81 (19%), Positives = 43/81 (53%)
Frame = +3
Query: 129 DDRKLFVGGLSWETSDKELRDHFSAYGEIESINVKTDPNTGRSRGFAFIVFKAPDSIDKV 308
+ R+L+V + ++ ++K++ F YG++ES+ + N + +GF ++V +
Sbjct: 755 EGRELYVTNIDFKVNEKDVETFFRDYGQVESVRIPKRFN--QHKGFGYVVMTTNQDAENA 812
Query: 309 MAAGEHTINSKKVDPKKAKAR 371
++A + ++ ++ +K R
Sbjct: 813 LSAAGKQLGNRVLNVVLSKPR 833
Score = 32.7 bits (71), Expect = 0.034
Identities = 15/37 (40%), Positives = 24/37 (64%)
Frame = +3
Query: 381 IFVGGLSSEISDDEIKNFFSNFGNIIEVEMPFDKTKN 491
+ V L S+IS++E+K FF + GNII + + D K+
Sbjct: 592 VLVTNLPSDISENELKIFFKDCGNIIRIFILEDNQKD 628
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 37.5 bits (83), Expect = 0.001
Identities = 13/50 (26%), Positives = 30/50 (60%)
Frame = +3
Query: 141 LFVGGLSWETSDKELRDHFSAYGEIESINVKTDPNTGRSRGFAFIVFKAP 290
++VG + +E +++++ D F G ++S + DP +G+ +G+ F + P
Sbjct: 7 VYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHDP 56
Score = 29.1 bits (62), Expect = 0.42
Identities = 10/44 (22%), Positives = 24/44 (54%)
Frame = +3
Query: 381 IFVGGLSSEISDDEIKNFFSNFGNIIEVEMPFDKTKNQRKGFCF 512
++VG + E++++++ + F G + ++ D Q KG+ F
Sbjct: 7 VYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGF 50
>SPBC13A2.01c |||nuclear cap-binding complex small
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 35.1 bits (77), Expect = 0.006
Identities = 22/80 (27%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Frame = +3
Query: 141 LFVGGLSWETSDKELRDHFSAYGEIESINVKTDPNTGRSRGFAFI-VFKAPDSIDKVMAA 317
++VG LS+ T+++++ FS GEI I + D T GF F+ F+ D++D +
Sbjct: 34 VYVGNLSFYTTEEQIYALFSKCGEIRRIIMGVDRFTKTPCGFCFVEYFENQDALDSLKYI 93
Query: 318 GEHTINSKKVDPKKAKARHG 377
+++ + + +A HG
Sbjct: 94 SRTSLDERII---RADLDHG 110
Score = 34.3 bits (75), Expect = 0.011
Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
Frame = +3
Query: 294 SIDKVMAAGEHTINSKKVDPKKAKA--RHGKIFVGGLSSEISDDEIKNFFSNFGNIIEVE 467
SI ++ A + I K D + A + ++VG LS ++++I FS G I +
Sbjct: 3 SITRLDAVSPYLIRRFKNDLRALDAVKQSNCVYVGNLSFYTTEEQIYALFSKCGEIRRII 62
Query: 468 MPFDKTKNQRKGFCFI 515
M D+ GFCF+
Sbjct: 63 MGVDRFTKTPCGFCFV 78
>SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 137
Score = 34.7 bits (76), Expect = 0.008
Identities = 17/48 (35%), Positives = 30/48 (62%)
Frame = +3
Query: 141 LFVGGLSWETSDKELRDHFSAYGEIESINVKTDPNTGRSRGFAFIVFK 284
LF+ LS++ + +E+ D F YG + I + NT ++RG AF+V++
Sbjct: 14 LFIKNLSFKITAEEMYDLFGRYGPVRQIRL---GNTVQTRGTAFVVYE 58
>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 478
Score = 34.3 bits (75), Expect = 0.011
Identities = 15/56 (26%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Frame = +3
Query: 132 DRKLFVGGLSWETSDKELRDHFSAYGEIESINV--KTDPNTGRSRGFAFIVFKAPD 293
+++++VGGLS +L FS +G + ++ + K+ P G + FA++ F+ +
Sbjct: 4 EKRIYVGGLSSSIESSDLESRFSRFGSVSNLEIINKSTP-VGTIQRFAYLNFRTDE 58
Score = 34.3 bits (75), Expect = 0.011
Identities = 13/31 (41%), Positives = 23/31 (74%)
Frame = +3
Query: 378 KIFVGGLSSEISDDEIKNFFSNFGNIIEVEM 470
+I+VGGLSS I ++++ FS FG++ +E+
Sbjct: 6 RIYVGGLSSSIESSDLESRFSRFGSVSNLEI 36
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 32.7 bits (71), Expect = 0.034
Identities = 13/38 (34%), Positives = 24/38 (63%)
Frame = +3
Query: 177 KELRDHFSAYGEIESINVKTDPNTGRSRGFAFIVFKAP 290
++L + FS +G I+S + + P+T S+G+ F+ F P
Sbjct: 435 QQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSFSHP 472
Score = 25.4 bits (53), Expect = 5.1
Identities = 18/62 (29%), Positives = 25/62 (40%)
Frame = +3
Query: 309 MAAGEHTINSKKVDPKKAKARHGKIFVGGLSSEISDDEIKNFFSNFGNIIEVEMPFDKTK 488
M A E K KK + I+VG L S ++ F FGN + M + K
Sbjct: 1 MIALEKLSEKNKRSTKKCEI---SIYVGNLPSTCQSSDLHELFEPFGNFSKFHM-LSRKK 56
Query: 489 NQ 494
N+
Sbjct: 57 NK 58
>SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 243
Score = 31.9 bits (69), Expect = 0.059
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +3
Query: 381 IFVGGLSSEISDDEIKNFFSNFGNIIEVEMPFDKTKNQRKGFCFI 515
I V L+ ++ + I F +G I + MP K KG+C+I
Sbjct: 101 ILVENLTRNVTKEHIAEIFGIYGLIDHIFMPIYKKSELNKGYCYI 145
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 31.9 bits (69), Expect = 0.059
Identities = 18/83 (21%), Positives = 38/83 (45%), Gaps = 2/83 (2%)
Frame = +3
Query: 99 DNSAEAPGRDDDRKLFVGGLSWETSDKELRDHFSAYGEIESINVKTDPNTGRSRGFAFIV 278
D+ A+ D K+++ L + ++ + +G++ S + + G S+GF F
Sbjct: 298 DDYAKNDVLDSKDKIYISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSSKGFCFCE 357
Query: 279 FKAPDSIDKVMAA--GEHTINSK 341
FK P + ++ G+ T +K
Sbjct: 358 FKNPSDAEVAISGLDGKDTYGNK 380
Score = 31.9 bits (69), Expect = 0.059
Identities = 11/45 (24%), Positives = 23/45 (51%)
Frame = +3
Query: 378 KIFVGGLSSEISDDEIKNFFSNFGNIIEVEMPFDKTKNQRKGFCF 512
KI++ L + +D++ FG+++ ++ + KGFCF
Sbjct: 311 KIYISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSSKGFCF 355
>SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 199
Score = 31.9 bits (69), Expect = 0.059
Identities = 15/55 (27%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Frame = +3
Query: 129 DDRKLFVGGLSWETSDKELRDHF-SAYGEIESINVKTDPNTGRSRGFAFIVFKAP 290
++ K+ V L + ++ ++++ F + G + +++ PN GRS+G A I+F P
Sbjct: 53 EESKIIVSNLPTDVTEAQVKELFVKSIGPCKRVSLAYGPN-GRSKGIATIIFSRP 106
>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 31.1 bits (67), Expect = 0.10
Identities = 14/55 (25%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Frame = +3
Query: 354 KKAKARHGKIF-VGGLSSEISDDEIKNFFSNFGNIIEVEMPFDKTKNQRKGFCFI 515
+ AK+ G I V G+ E +++++++ F++FG + + + D+ KG+ I
Sbjct: 2 RPAKSVEGYIIIVTGVHPEATEEQVEDLFADFGPVKNLHLNLDRRTGYVKGYALI 56
>SPAC2G11.03c |vps45||vacuolar sorting protein Vps
45|Schizosaccharomyces pombe|chr 1|||Manual
Length = 558
Score = 30.7 bits (66), Expect = 0.14
Identities = 17/79 (21%), Positives = 34/79 (43%)
Frame = +3
Query: 165 ETSDKELRDHFSAYGEIESINVKTDPNTGRSRGFAFIVFKAPDSIDKVMAAGEHTINSKK 344
E S R++ GE+E V +P + ++F K+ A +++ ++
Sbjct: 337 EISQVVQRENLLEVGEVEQSLVCNEPQSTDFNDIQRLLFSNISENTKLRLAALYSLRFER 396
Query: 345 VDPKKAKARHGKIFVGGLS 401
+DP K A + GG++
Sbjct: 397 IDPAKVSALQQMLIAGGVN 415
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 30.3 bits (65), Expect = 0.18
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +3
Query: 135 RKLFVGGLSWETSDKELRDHFSAYGEIESINVKTDPN 245
R +F+G L +KE+ + F +G+IE I + + N
Sbjct: 299 RNVFIGNLPSSYHEKEIEEAFGKFGKIEHIKILSKKN 335
Score = 26.6 bits (56), Expect = 2.2
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +3
Query: 381 IFVGGLSSEISDDEIKNFFSNFGNIIEVEM 470
+F+G L S + EI+ F FG I +++
Sbjct: 301 VFIGNLPSSYHEKEIEEAFGKFGKIEHIKI 330
>SPCC550.02c |cwf5|ecm2|RNA-binding protein Cwf5|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 354
Score = 29.5 bits (63), Expect = 0.32
Identities = 27/106 (25%), Positives = 51/106 (48%), Gaps = 1/106 (0%)
Frame = +3
Query: 111 EAPGRDDDRKLFVGGLSWETSDKELRDHFSAYGEIESINVKTDPNTGRSRGFAFIVFKAP 290
E P LF+ G+ E +D ++R HF YG ++S+ + R++ AF+ FK
Sbjct: 204 EPPKDKKIASLFLIGVEDELADYKIRKHFEQYGPLKSVVC-----SHRAK-CAFVNFKTR 257
Query: 291 DSIDKVMAAGEHTINSKKVDPKKAKARHGK-IFVGGLSSEISDDEI 425
S + +AA + ++ + K + GK +GG E+ + ++
Sbjct: 258 SSAE--IAAAASPDGNVVIEGFRLKVQWGKPRSLGGPEGEVRNAKL 301
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 28.7 bits (61), Expect = 0.55
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = +3
Query: 381 IFVGGLSSEISDDEIKNFFSNFGNIIEVEMPFDKTKNQRKGFCFI 515
+FV L+ D++++ FS FG II ++ DK + FI
Sbjct: 246 LFVCKLNPVTQDEDLELIFSRFGKIISCQVIRDKETGDSLQYAFI 290
>SPBC887.09c |||leucine-rich repeat protein Sog2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 886
Score = 28.7 bits (61), Expect = 0.55
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Frame = +3
Query: 402 SEISDDEIKNFFSNFGNIIEVEM---PFDKTKNQRKGFCF 512
S +++D + ++FSN G EVEM F+KT +G F
Sbjct: 477 SNLTNDSVNSYFSNIGG-SEVEMKHSAFEKTLESSRGILF 515
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 27.9 bits (59), Expect = 0.96
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = +3
Query: 135 RKLFVGGLSWETSDKELRDHFSAYGEIESINVKTDPN 245
R +F+G L ++ E+R+ +G I+ I + T+ N
Sbjct: 206 RNVFLGNLPNGITEDEIREDLEPFGPIDQIKIVTERN 242
Score = 27.9 bits (59), Expect = 0.96
Identities = 19/81 (23%), Positives = 35/81 (43%)
Frame = +3
Query: 3 YKSWLITNIFAQDITTDNQLNGNSEHGGGDGQDNSAEAPGRDDDRKLFVGGLSWETSDKE 182
++ + ++NI I G +H G N A A R +++G + +
Sbjct: 371 FRFFEMSNIHGLVIRNRRLKIGWGKHSG-PLPSNIALAVAGGASRNIYIGNADDSLTIER 429
Query: 183 LRDHFSAYGEIESINVKTDPN 245
L++ F +GEIE +N + N
Sbjct: 430 LKEDFEEFGEIEYVNFFREKN 450
Score = 26.2 bits (55), Expect = 2.9
Identities = 10/30 (33%), Positives = 20/30 (66%)
Frame = +3
Query: 381 IFVGGLSSEISDDEIKNFFSNFGNIIEVEM 470
+F+G L + I++DEI+ FG I ++++
Sbjct: 208 VFLGNLPNGITEDEIREDLEPFGPIDQIKI 237
>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
protein 1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 567
Score = 27.5 bits (58), Expect = 1.3
Identities = 13/60 (21%), Positives = 27/60 (45%)
Frame = +3
Query: 333 NSKKVDPKKAKARHGKIFVGGLSSEISDDEIKNFFSNFGNIIEVEMPFDKTKNQRKGFCF 512
+ K ++ +R +++ GL SD+ + + + FG + + D N KG+ F
Sbjct: 282 HDNKKSNMESTSRTRNVYIRGLPPNTSDENLLLYTNRFGKVSSSKAIIDMETNLCKGYGF 341
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 27.1 bits (57), Expect = 1.7
Identities = 8/37 (21%), Positives = 20/37 (54%)
Frame = +3
Query: 345 VDPKKAKARHGKIFVGGLSSEISDDEIKNFFSNFGNI 455
+ P K +F+GG++ + + +++ F FG++
Sbjct: 396 IPPDSIKVYSRTLFLGGITRSVREPVLRSMFERFGSV 432
>SPAC1952.05 |gcn5||histone acetyltransferase
Gcn5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 454
Score = 26.2 bits (55), Expect = 2.9
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +3
Query: 258 RGFAFIVFKAPDSIDKVMAAGEHTINSKK 344
RGFA IVF A S ++V G H +N K
Sbjct: 187 RGFAEIVFCAIASNEQVRGYGSHLMNHLK 215
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 25.8 bits (54), Expect = 3.9
Identities = 7/31 (22%), Positives = 21/31 (67%)
Frame = +3
Query: 378 KIFVGGLSSEISDDEIKNFFSNFGNIIEVEM 470
++FVG + + + +++ +FF +G I++ ++
Sbjct: 5 RLFVGRIPPQATREDMMDFFKGYGQILDCKL 35
Score = 25.4 bits (53), Expect = 5.1
Identities = 9/28 (32%), Positives = 18/28 (64%)
Frame = +3
Query: 132 DRKLFVGGLSWETSDKELRDHFSAYGEI 215
+ +LFVG + + + +++ D F YG+I
Sbjct: 3 ETRLFVGRIPPQATREDMMDFFKGYGQI 30
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,127,077
Number of Sequences: 5004
Number of extensions: 42568
Number of successful extensions: 209
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 204
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 210309424
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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