Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_G04
         (442 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    29   0.32 
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo...    29   0.42 
SPBC342.01c |alg6|SPBC3F6.06c|glucosyltransferase Alg6|Schizosac...    27   0.97 
SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual    26   2.2  
SPBC1718.05 |trs31||TRAPP complex subunit Trs31 |Schizosaccharom...    25   5.2  
SPAC15F9.01c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   6.8  
SPBC725.17c |rrn11||RNA polymerase I transcription factor subuni...    24   9.0  
SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit Prw1...    24   9.0  

>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 2386

 Score = 29.1 bits (62), Expect = 0.32
 Identities = 12/24 (50%), Positives = 18/24 (75%)
 Frame = -2

Query: 417 SALSLAFLYFSILPRSYSLLFYPF 346
           +A+SL FL   +LP++ + LFYPF
Sbjct: 328 TAISLFFLSLFVLPKTVAGLFYPF 351


>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
           Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1826

 Score = 28.7 bits (61), Expect = 0.42
 Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
 Frame = -3

Query: 413 HFLWPSSTFPSFHVHIHYYFTLSDSLTASVAQLHY--GTTIVMWSRVRSPGRAQVILGF 243
           HFL   S     H+ + +YFT+ +S T      HY  GT     ++  +P  A  +  F
Sbjct: 419 HFLHNFSRIWILHISVFWYFTVYNSPTIYTPNFHYLEGTQPARAAKWCAPALAGAVASF 477


>SPBC342.01c |alg6|SPBC3F6.06c|glucosyltransferase
           Alg6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 506

 Score = 27.5 bits (58), Expect = 0.97
 Identities = 16/39 (41%), Positives = 18/39 (46%)
 Frame = -2

Query: 429 LHTPSALSLAFLYFSILPRSYSLLFYPFRLFDRLGGAVA 313
           LH    +SL F   SILP    L  YP +    LG A A
Sbjct: 313 LHQLQVISLIFTLISILPSCVILFLYPRKRLLALGFASA 351


>SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1339

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -1

Query: 88  LHVIFFLSSFNISTTGATFEHPLVPIP 8
           +H++FF S F  ST    F+  LVP P
Sbjct: 170 VHLLFFKSLFKFSTNLVKFQWFLVPEP 196


>SPBC1718.05 |trs31||TRAPP complex subunit Trs31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 209

 Score = 25.0 bits (52), Expect = 5.2
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -3

Query: 299 IVMWSRVRSPGRAQVILGFSTQYHHGVW 216
           +V+W R R+P R   ILG     H  VW
Sbjct: 85  LVVW-RERNPKRETRILGILQYIHSSVW 111


>SPAC15F9.01c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 227

 Score = 24.6 bits (51), Expect = 6.8
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +3

Query: 36  VAPVVEMLKEDKKKITCKHACYPEGLGRGEIANYTAH 146
           ++P++ +  EDK K+ C  + +   LG+  I  +T H
Sbjct: 128 LSPLIHISGEDKYKVLCLFSIWRRKLGKCSI--FTVH 162


>SPBC725.17c |rrn11||RNA polymerase I transcription factor subunit
           Rrn11 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 200

 Score = 24.2 bits (50), Expect = 9.0
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = -2

Query: 132 SLFHLCLTLRDNRRAYMLFSSCL 64
           SL HLCL  +D  RA   FS  L
Sbjct: 46  SLMHLCLLRKDYPRASRAFSLLL 68


>SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit
           Prw1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 431

 Score = 24.2 bits (50), Expect = 9.0
 Identities = 12/36 (33%), Positives = 15/36 (41%)
 Frame = +3

Query: 192 LSPHRAQIPDSVMILSRKTQYHLGPTRGSNPRPHND 299
           L  H  + PD+    +R    H GP       PHND
Sbjct: 259 LHVHDIRRPDASTKPARSVHAHSGPIHSVAFNPHND 294


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,001,590
Number of Sequences: 5004
Number of extensions: 40653
Number of successful extensions: 91
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 160149590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)