Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_G04
         (442 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0571 - 25713519-25714064,25714673-25714804                       28   2.9  
01_07_0345 + 42877363-42878367                                         28   3.8  
05_03_0475 + 14486969-14487140,14487215-14487338,14487424-144875...    27   5.1  
11_02_0044 - 7695794-7695918,7696353-7696542,7696633-7696759,770...    27   6.7  
05_05_0392 + 24629528-24630442                                         27   6.7  
01_06_1174 - 35126903-35127015,35127096-35127160,35127417-351275...    27   6.7  
03_06_0155 - 32031370-32031707,32033066-32033279                       27   8.8  
03_02_0658 + 10228794-10228943,10229042-10229105,10229510-102298...    27   8.8  

>03_05_0571 - 25713519-25714064,25714673-25714804
          Length = 225

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 16/63 (25%), Positives = 24/63 (38%)
 Frame = +3

Query: 243 KTQYHLGPTRGSNPRPHNDSRTVMQLRHRGGQRVGKGKIVMNMNVEGWKSRGRPKKVRME 422
           K Q+H      +   P + S T   ++ RGG  VG G +      +   + G    V   
Sbjct: 119 KHQHHQHQQHSAGASPSSSSVTTSSVKRRGGGGVGDGAVEQGDGCDSPSAAGGGGMVAAA 178

Query: 423 CVR 431
           C R
Sbjct: 179 CPR 181


>01_07_0345 + 42877363-42878367
          Length = 334

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = -2

Query: 138 CSSLFHLCLTLRDNRRAYMLFSSCLLLTFLPLAQHSNTPSCRFLQP 1
           C   FHL    R+   A++   +C+L     LA H++ P CR   P
Sbjct: 134 CKEPFHLAAEAREMPCAHIYHHNCILPW---LALHNSCPVCRHRMP 176


>05_03_0475 +
           14486969-14487140,14487215-14487338,14487424-14487559,
           14487663-14488997
          Length = 588

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
 Frame = +2

Query: 41  ASGRNVKRRQEENNM*ARLL-SRRVRQR*NSELHRPRFAELSSVPDVTGGEPVATSGTNS 217
           ++GRN +R +   +  +R   SRR     N+     R A+LSS    +GG P +  G  +
Sbjct: 371 SAGRNARREEAVTHESSRNSDSRRKIDVANTSAAARRTADLSSPRGASGGSPTSGGGGRN 430

Query: 218 RLRD 229
           +  D
Sbjct: 431 KSTD 434


>11_02_0044 -
           7695794-7695918,7696353-7696542,7696633-7696759,
           7701596-7701824,7702973-7703005,7703191-7703281
          Length = 264

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 5/70 (7%)
 Frame = -1

Query: 223 ESGICARCGDRLTPCHIWDGTELGETW---AV*FAISPLPNPSG*QACLHVIFFLSSFN- 56
           E+ +C  CGD       W   +  ETW   ++  +  PL   +G ++   V+ F++S N 
Sbjct: 195 ENTLCGACGDNYGQDEFWICCDACETWFHASLLISFCPLKILAGRRS--SVVIFVNSLNY 252

Query: 55  -ISTTGATFE 29
            +S + A F+
Sbjct: 253 KLSCSDADFD 262


>05_05_0392 + 24629528-24630442
          Length = 304

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 25/77 (32%), Positives = 31/77 (40%)
 Frame = +3

Query: 195 SPHRAQIPDSVMILSRKTQYHLGPTRGSNPRPHNDSRTVMQLRHRGGQRVGKGKIVMNMN 374
           SP RAQ  +S    +  TQ    P   S+P P  D+         G    G G+ V    
Sbjct: 234 SPRRAQETNSPASSTTTTQSRGPPPHCSSPPPPQDA---------GASAAGAGEEVAGGR 284

Query: 375 VEGWKSRGRPKKVRMEC 425
            EG +S   P  V MEC
Sbjct: 285 GEGKESLDNP-SVAMEC 300


>01_06_1174 -
           35126903-35127015,35127096-35127160,35127417-35127503,
           35128560-35128731,35128874-35128919
          Length = 160

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -1

Query: 190 LTPCHIWDGTELGETWA 140
           L PCH+ +G  LG  WA
Sbjct: 76  LRPCHVGEGIVLGSMWA 92


>03_06_0155 - 32031370-32031707,32033066-32033279
          Length = 183

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -1

Query: 313 ITVRLSLCGLGLDPR-VGPK*YWVFLLSIITESGICARC 200
           +T  ++L GLGL    VGP+ YW    ++   +G C  C
Sbjct: 19  VTAVVALLGLGLAAYIVGPQLYWHASEALGRSTGACPAC 57


>03_02_0658 +
           10228794-10228943,10229042-10229105,10229510-10229805,
           10230689-10230904,10231409-10231549,10232407-10232499,
           10234010-10234108,10234198-10234227,10234274-10234360,
           10234636-10234689,10234758-10234835,10235128-10235202,
           10236265-10236356,10236433-10236490,10236590-10236664,
           10236966-10237013,10239003-10239065,10239167-10239258,
           10239693-10239761,10239867-10239930,10240007-10240072,
           10240170-10240271
          Length = 703

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +2

Query: 131 ELHRPRFAELSSVPDVTGGEPVA 199
           +L  PR AE+  VP V G  PVA
Sbjct: 20  KLECPRLAEMGLVPHVFGSHPVA 42


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,060,860
Number of Sequences: 37544
Number of extensions: 303857
Number of successful extensions: 795
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 778
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 795
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 835800280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)