Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_G04
         (442 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81050-6|CAB02856.1|  713|Caenorhabditis elegans Hypothetical pr...    28   3.5  
Z82059-2|CAB04876.3|  557|Caenorhabditis elegans Hypothetical pr...    27   6.0  
AL034489-1|CAA22461.1|  538|Caenorhabditis elegans Hypothetical ...    27   8.0  

>Z81050-6|CAB02856.1|  713|Caenorhabditis elegans Hypothetical
           protein C50B6.7 protein.
          Length = 713

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 11/43 (25%), Positives = 24/43 (55%)
 Frame = -3

Query: 311 YGTTIVMWSRVRSPGRAQVILGFSTQYHHGVWNLCPMWRQAHP 183
           Y TT+++  +  +PG+   + G ++Q H+G  +  P  + + P
Sbjct: 524 YSTTVILLKKDTNPGQNIFVRGGTSQAHNGKCSTGPYQQSSDP 566


>Z82059-2|CAB04876.3|  557|Caenorhabditis elegans Hypothetical
           protein T27E9.5 protein.
          Length = 557

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -1

Query: 280 LDPRVGPK*YWVFLLSIITESGICARCG 197
           L  RVG +  WVF++  + E  IC +CG
Sbjct: 450 LTRRVGMQ-SWVFVVICVLELAICVKCG 476


>AL034489-1|CAA22461.1|  538|Caenorhabditis elegans Hypothetical
           protein Y7A5A.1 protein.
          Length = 538

 Score = 26.6 bits (56), Expect = 8.0
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -2

Query: 372 SYSLLFYPFRLFDRLGGA 319
           +Y LL YP R++D  GGA
Sbjct: 400 TYPLLVYPCRIYDHKGGA 417


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,356,346
Number of Sequences: 27780
Number of extensions: 241212
Number of successful extensions: 693
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 682
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 693
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 756625558
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)