Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_G04
         (442 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    24   0.85 
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   2.0  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    22   3.4  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    22   3.4  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    22   3.4  

>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 23.8 bits (49), Expect = 0.85
 Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
 Frame = -2

Query: 138 CSSLFHLCLTLRDNRRAYMLFSSCL---LLTFLPLAQHSNTPSCRF 10
           C  +  L  T +D +  YML  +CL   L T L    H +  + RF
Sbjct: 425 CDFVVKLFKTFKDRKYLYMLMEACLGGELWTVLRDKGHFDDGTTRF 470


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 22.6 bits (46), Expect = 2.0
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +2

Query: 140 RPRFAELSSVPDVTGGE 190
           +PRF  +SS PDV  G+
Sbjct: 895 QPRFYSISSSPDVHQGQ 911



 Score = 21.8 bits (44), Expect = 3.4
 Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
 Frame = +3

Query: 186 VSLSP--HRAQIPDSVMILSRKTQYHLGP 266
           +S SP  H+ QI  +V ++  KTQ   GP
Sbjct: 901 ISSSPDVHQGQIHLTVAVVQYKTQDGFGP 929



 Score = 21.0 bits (42), Expect = 6.0
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +2

Query: 116 QR*NSELHRPRFAELSSVPDVTG 184
           +R NSE HR R+  +     VTG
Sbjct: 81  RRLNSEAHRIRWESVQKEVTVTG 103


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.8 bits (44), Expect = 3.4
 Identities = 7/37 (18%), Positives = 17/37 (45%)
 Frame = +3

Query: 213 IPDSVMILSRKTQYHLGPTRGSNPRPHNDSRTVMQLR 323
           +PD+  +  +++ +H+  T     R H+       +R
Sbjct: 95  VPDTFFVNEKQSYFHIATTSNEFIRIHHSGSITRSIR 131


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.8 bits (44), Expect = 3.4
 Identities = 7/37 (18%), Positives = 17/37 (45%)
 Frame = +3

Query: 213 IPDSVMILSRKTQYHLGPTRGSNPRPHNDSRTVMQLR 323
           +PD+  +  +++ +H+  T     R H+       +R
Sbjct: 95  VPDTFFVNEKQSYFHIATTSNEFIRIHHSGSITRSIR 131


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.8 bits (44), Expect = 3.4
 Identities = 7/37 (18%), Positives = 17/37 (45%)
 Frame = +3

Query: 213 IPDSVMILSRKTQYHLGPTRGSNPRPHNDSRTVMQLR 323
           +PD+  +  +++ +H+  T     R H+       +R
Sbjct: 34  VPDTFFVNEKQSYFHIATTSNEFIRIHHSGSITRSIR 70


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,905
Number of Sequences: 438
Number of extensions: 3215
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11450997
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)