Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_G03
         (493 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    27   1.5  
SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||M...    27   2.0  
SPAC17H9.18c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual       26   2.7  
SPBC2G5.02c |||CK2 family regulatory subunit |Schizosaccharomyce...    26   3.5  
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom...    25   4.7  
SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pomb...    25   8.2  
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual      25   8.2  

>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2685

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +2

Query: 182 VTLYMTEINYLFTQIIICFVSTLHRPCVFF 271
           ++ + TEIN+L      CF S LH  C+F+
Sbjct: 710 ISRFTTEINFLR-----CFASLLHNCCIFY 734


>SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1258

 Score = 26.6 bits (56), Expect = 2.0
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +2

Query: 125  FEKLISILLYSYYCQIIQTVTLYMTEINYLF 217
            +++L  ++LYS+Y    + + LYMT+  Y F
Sbjct: 960  YQRLSKLILYSFY----KNIALYMTQFWYAF 986


>SPAC17H9.18c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 105

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +1

Query: 139 FYIIIFILLSNYTNSYIIYDRNKLLIYSNYYL 234
           FYI+I I+       Y+I    KLL+ SNY L
Sbjct: 53  FYILIMIIQHLKEIHYLISASAKLLLASNYLL 84


>SPBC2G5.02c |||CK2 family regulatory subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 254

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 12/44 (27%), Positives = 21/44 (47%)
 Frame = -1

Query: 406 HQNT*WTIFIVPS*TLQYFILIVANVINYLMIITIINLTSNYYN 275
           H+N  W  +       +YF+ +  + I  L  +T +NL   +YN
Sbjct: 36  HENVSWISWFCSRPGREYFVEVKEDFIEDLFNLTGLNLAVPFYN 79


>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1375

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 12/44 (27%), Positives = 21/44 (47%)
 Frame = -3

Query: 470 NILSRSSYEEHSFSKIINYLAAPEHIMDNIHCTLVNITIFYLNS 339
           N++  S YE+H  +  INY      I   +   L++   F++ S
Sbjct: 661 NVIYNSKYEDHGKNLPINYFGLDHFIHLRVWYVLLHKIYFFIAS 704


>SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1136

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +3

Query: 129 RNLFLYYYIHIIVKLYKQLHYI 194
           +NL   YY+H+  KL+++  YI
Sbjct: 892 QNLLSCYYLHLSKKLFEESAYI 913


>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1489

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -1

Query: 352 FILIVANVINYLMIITIINLTSNYYN 275
           F+LI ++ + +L    I+N+  N YN
Sbjct: 452 FVLIQSSALGFLTRHAIVNMLDNLYN 477


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,968,951
Number of Sequences: 5004
Number of extensions: 39640
Number of successful extensions: 83
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 192109570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)