Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_G03
         (493 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0296 - 2303344-2303395,2303732-2304180,2304287-2304355,230...    27   8.2  

>05_01_0296 -
           2303344-2303395,2303732-2304180,2304287-2304355,
           2304539-2306546,2311181-2311425
          Length = 940

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 16/62 (25%), Positives = 28/62 (45%)
 Frame = -1

Query: 406 HQNT*WTIFIVPS*TLQYFILIVANVINYLMIITIINLTSNYYNLEKYTRTV*SRHKTNN 227
           HQN  W++ I  S  L   I+ +  ++N L +  ++ +   Y   E     +  R+K  N
Sbjct: 201 HQNIRWSLNIFYSLVLAQGIIFICMLLNPLTVYFVLKVRRKYKLFEPSGLKIIYRYKKYN 260

Query: 226 NL 221
            L
Sbjct: 261 YL 262


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,500,970
Number of Sequences: 37544
Number of extensions: 177232
Number of successful extensions: 266
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 262
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 266
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1023611560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)