Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_G03
         (493 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U14635-7|AAC46658.2|  521|Caenorhabditis elegans Hypothetical pr...    32   0.26 
Z93383-11|CAI58635.1|  279|Caenorhabditis elegans Hypothetical p...    29   1.4  
U41746-1|AAA83330.3|  347|Caenorhabditis elegans Seven tm recept...    28   3.2  
U41991-3|AAA83343.2|  350|Caenorhabditis elegans Seven tm recept...    28   4.2  
AL021497-8|CAA16409.1|  334|Caenorhabditis elegans Hypothetical ...    27   5.6  
Z75549-4|CAA99919.2|  304|Caenorhabditis elegans Hypothetical pr...    27   7.4  
AL132859-6|CAB60493.3|  324|Caenorhabditis elegans Hypothetical ...    27   7.4  
AF038623-6|AAB94154.1|  388|Caenorhabditis elegans Hypothetical ...    27   7.4  
AF036693-1|AAK29785.1|  391|Caenorhabditis elegans Hypothetical ...    27   7.4  
Z93383-14|CAB07631.2|  279|Caenorhabditis elegans Hypothetical p...    27   9.8  
Z72510-1|CAA96651.1|  572|Caenorhabditis elegans Hypothetical pr...    27   9.8  
U46671-3|AAY86216.1|  133|Caenorhabditis elegans Hypothetical pr...    27   9.8  

>U14635-7|AAC46658.2|  521|Caenorhabditis elegans Hypothetical
           protein C27H5.4a protein.
          Length = 521

 Score = 31.9 bits (69), Expect = 0.26
 Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
 Frame = +2

Query: 149 LYSYYCQIIQTVTLYMTEINYLFT-QIIICFVSTLHRPCVFFEIIIIRS*VYNSYNH*IV 325
           L SY   +I  ++     INY+FT + I  F    H P  + +++ I   V+N+ N  ++
Sbjct: 7   LLSYSALLIGLISFAADSINYVFTSKYIQVFFDEFHLPPSYLKVVQILFLVWNAVNDPMM 66

Query: 326 NYV 334
            Y+
Sbjct: 67  GYM 69


>Z93383-11|CAI58635.1|  279|Caenorhabditis elegans Hypothetical
           protein F54B8.16 protein.
          Length = 279

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = +1

Query: 124 FRETYFYIIIFILLSNYTNSYIIYDRNKLLIYSNYYL-FCVDFTPSL 261
           F +T F+I +++L S +    + Y    LLIY       C  FT S+
Sbjct: 15  FAQTVFHINLYLLFSTFFTKKVCYRPELLLIYCKIAADICYSFTVSI 61


>U41746-1|AAA83330.3|  347|Caenorhabditis elegans Seven tm receptor
           protein 177 protein.
          Length = 347

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 16/43 (37%), Positives = 26/43 (60%)
 Frame = +3

Query: 57  VTQCLIVPLSNDIYIV*LILWKISRNLFLYYYIHIIVKLYKQL 185
           V  C+  PL+  I+++ LIL K S+ +  Y Y+ I V +Y+ L
Sbjct: 16  VGTCIANPLN--IFLIYLILTKSSKKIGNYKYLMIYVSIYEIL 56


>U41991-3|AAA83343.2|  350|Caenorhabditis elegans Seven tm receptor
           protein 220 protein.
          Length = 350

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 14/48 (29%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
 Frame = +3

Query: 48  LDVVTQC-LIVPLSNDIYIV*LILWKISRNLFLYYYIHIIVKLYKQLH 188
           L + T+C L   +  + ++V LIL K  R L +Y Y+ + + +++ L+
Sbjct: 11  LHIFTKCSLFFAILFNTFLVYLILTKSPRQLGVYKYLMVFISIFEILY 58


>AL021497-8|CAA16409.1|  334|Caenorhabditis elegans Hypothetical
           protein Y51A2D.12 protein.
          Length = 334

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 17/50 (34%), Positives = 26/50 (52%)
 Frame = +1

Query: 121 KFRETYFYIIIFILLSNYTNSYIIYDRNKLLIYSNYYLFCVDFTPSLCIF 270
           KF  T  Y ++ +L+ +     II D +K    S + LFCV F  +LC +
Sbjct: 8   KFMVTTSYGVLSMLIYSGITCVIIND-HKTFKSSFFKLFCVGFFMNLCTY 56


>Z75549-4|CAA99919.2|  304|Caenorhabditis elegans Hypothetical
           protein T19C4.4 protein.
          Length = 304

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = +1

Query: 139 FYIIIFILLSNYTNSYIIYDRNKLLIYSNYYLFC 240
           FYI+ FI+  N+  +Y+ Y    L+  + + + C
Sbjct: 85  FYILEFIMTMNFHMAYVQYAITALIALNRFSIIC 118


>AL132859-6|CAB60493.3|  324|Caenorhabditis elegans Hypothetical
           protein Y39C12A.7 protein.
          Length = 324

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 14/48 (29%), Positives = 29/48 (60%), Gaps = 3/48 (6%)
 Frame = -1

Query: 355 YFILIVANVINYLMIITIINLTSNYYN--LEK-YTRTV*SRHKTNNNL 221
           + +L ++N+I+Y++ I    L   YYN  L K +T ++  R++ + N+
Sbjct: 146 FLVLFMSNIISYIVNIINYKLNRYYYNCSLRKLHTYSLTERYQISENI 193


>AF038623-6|AAB94154.1|  388|Caenorhabditis elegans Hypothetical
           protein T08B6.2 protein.
          Length = 388

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
 Frame = -3

Query: 428 KIINYLAAPEHIMDNIHC---TLVNITIFYLNSCQRN*LFNDYN 306
           KI+N     + I++NIHC     + I   Y N   RN + N +N
Sbjct: 48  KILNLFQILQFILENIHCKPGDRIAILFAYSNDLDRNVVKNVWN 91


>AF036693-1|AAK29785.1|  391|Caenorhabditis elegans Hypothetical
           protein C49A9.7 protein.
          Length = 391

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = +1

Query: 139 FYIIIFI-LLSNYTNSYIIYDRNKLLIYSNYYLF 237
           F + IF+ L+ N+T  +II    ++   +NYYLF
Sbjct: 68  FTLTIFLALMGNFTVMWIILYHRQMRSVTNYYLF 101


>Z93383-14|CAB07631.2|  279|Caenorhabditis elegans Hypothetical
           protein F54B8.12 protein.
          Length = 279

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = +1

Query: 139 FYIIIFILLSNYTNSYIIYDRNKLLIYSNYYLFCVDFTPSLCI 267
           F II FI+  +   S  ++  N  L+YS  Y   + F P L I
Sbjct: 2   FIIIAFIIALSILFSQFVFYFNLYLLYSILYSKRIGFKPELLI 44


>Z72510-1|CAA96651.1|  572|Caenorhabditis elegans Hypothetical
           protein F53B7.2 protein.
          Length = 572

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 8/30 (26%), Positives = 22/30 (73%)
 Frame = +1

Query: 139 FYIIIFILLSNYTNSYIIYDRNKLLIYSNY 228
           F+++IF ++++ +NSY+++D   + ++  Y
Sbjct: 135 FFMLIFPVIASMSNSYLLHDYYPVFLWFAY 164


>U46671-3|AAY86216.1|  133|Caenorhabditis elegans Hypothetical
           protein C14E2.7 protein.
          Length = 133

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = +1

Query: 115 YGKFRETYFYIIIFILLSNYTNSYIIYDRNKLLIYSNYYL 234
           YG      F     ++L+   N YII D+ K L YSN  L
Sbjct: 52  YGWTPVIIFATTCLLVLTTLFNGYIIEDQEKELSYSNKML 91


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,586,436
Number of Sequences: 27780
Number of extensions: 211831
Number of successful extensions: 583
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 568
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 582
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 924715866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)