Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_G03
         (493 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    26   0.19 
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    25   0.44 
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    24   0.76 
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          21   5.4  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      21   5.4  
AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    21   5.4  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    21   7.1  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    21   9.4  

>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 26.2 bits (55), Expect = 0.19
 Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
 Frame = +1

Query: 133 TYFYIIIFI--LLSNYTNSYIIYDRNKLLIYSNYYLF 237
           T  Y+IIF+  +  N T   +I     +   +NYYLF
Sbjct: 44  TIIYMIIFVTGIFGNITTCTVIIKNPAMQTATNYYLF 80


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 25.0 bits (52), Expect = 0.44
 Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
 Frame = +1

Query: 133 TYFYIIIFI--LLSNYTNSYIIYDRNKLLIYSNYYLF 237
           T  Y +IF+  L+ N +   +I     +   +NYYLF
Sbjct: 57  TVIYAVIFVTGLVGNVSTCVVIARNKSMHTATNYYLF 93


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 24.2 bits (50), Expect = 0.76
 Identities = 11/37 (29%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
 Frame = +1

Query: 133 TYFYIIIFI--LLSNYTNSYIIYDRNKLLIYSNYYLF 237
           T  Y++IF+   + N     +I+    +   +NYYLF
Sbjct: 37  TLTYVVIFVTGFVGNIITCIVIWRNPSMQTPTNYYLF 73


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +1

Query: 127 RETYFYIIIFILLSNYTNSYI 189
           ++TY  I  ++L +NYT  Y+
Sbjct: 189 KKTYNNIDYYLLAANYTGWYL 209


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +1

Query: 127 RETYFYIIIFILLSNYTNSYI 189
           ++TY  I  ++L +NYT  Y+
Sbjct: 189 KKTYNNIDYYLLAANYTGWYL 209


>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 9/33 (27%), Positives = 16/33 (48%)
 Frame = -3

Query: 473 HNILSRSSYEEHSFSKIINYLAAPEHIMDNIHC 375
           +N +  ++Y +  +  IIN    P  +   IHC
Sbjct: 320 NNTIHNNNYNKKLYYNIINIEQIPVPVPVPIHC 352


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +1

Query: 166 SNYTNSYIIYDRNKLLIYSNY 228
           +NY N+Y  Y+ N    Y+NY
Sbjct: 332 NNYNNNYNNYNNNN---YNNY 349


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +2

Query: 299 YNSYNH*IVNYVGNY 343
           YN+YN+   NY  NY
Sbjct: 334 YNNYNNYNNNYNNNY 348


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,608
Number of Sequences: 438
Number of extensions: 3387
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13544190
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)