Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_G02
         (524 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1A10.09 |ase1||microtubule-associated protein Ase1 |Schizos...    28   0.98 
SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyce...    27   1.7  
SPBC649.04 |uvi15||UV-induced protein Uvi15|Schizosaccharomyces ...    26   4.0  
SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein ...    25   6.9  
SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor Mc...    25   6.9  
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam...    25   9.1  
SPAC1805.05 |cki3||serine/threonine protein kinase Cki3|Schizosa...    25   9.1  
SPBC211.08c |||ribonuclease PH-like|Schizosaccharomyces pombe|ch...    25   9.1  
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz...    25   9.1  

>SPAPB1A10.09 |ase1||microtubule-associated protein Ase1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 731

 Score = 27.9 bits (59), Expect = 0.98
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = -2

Query: 256 ISGLWTELQPLVSNVRDALALLRNVRQHEAEVWETDLSEV 137
           +S LW +LQ +  N +       N+ Q    +WET+L ++
Sbjct: 270 VSNLWNKLQ-VSPNEQSQFGDSSNINQENISLWETELEKL 308


>SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 481

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +1

Query: 349 ETTPPKPQPPSANDPITLILSIQTDVLNLMTEVENFKGT 465
           E T P P P   ++P+  I S+  DVL L       +G+
Sbjct: 122 EATIPAPSPYLFSEPLPSISSLDLDVLRLTARYAAVRGS 160


>SPBC649.04 |uvi15||UV-induced protein Uvi15|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 87

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = +1

Query: 76  GPQPFVQQKVYPQTAYARATSPQRGQSPKPQP 171
           GP  +  Q+ YPQ  YA      +G  P  QP
Sbjct: 23  GPNYYPPQQNYPQQGYAPPQGYPQGGYPAQQP 54


>SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein
           Lsb1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 296

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 13/39 (33%), Positives = 16/39 (41%)
 Frame = +1

Query: 106 YPQTAYARATSPQRGQSPKPQPHVDEHYVKVPVHHEHST 222
           Y QTAY    +P       PQ       V  P  H+HS+
Sbjct: 228 YQQTAYPPQQAPYPPVQAYPQAPQQPIVVAQPTEHKHSS 266


>SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor
           Mcl1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 815

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 16/50 (32%), Positives = 22/50 (44%)
 Frame = +2

Query: 35  SRAFGTRLAKASGKVLNLSCNKKFIRRQLTPELLHLREVSLPNLSLMLTN 184
           S+ F  R AKAS K +  S N  F+       +L+  +     L   LTN
Sbjct: 128 SQIFSLRPAKASNKHVTYSPNGNFLAVSSCNGILYFYDTQTRELIKFLTN 177


>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
           Mam3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = +3

Query: 21  SATNFLELSVPV*QRLQARSSTFRATKSLSADSLRPSYFTS-ERSVSQTSA 170
           S ++ L +  PV   L   S++F    SLS+  L    FTS   S+S T+A
Sbjct: 483 STSSSLVVIPPVNSSLVTSSTSFTKFSSLSSSQLSTENFTSASSSLSLTNA 533


>SPAC1805.05 |cki3||serine/threonine protein kinase
           Cki3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 439

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +1

Query: 85  PFVQQKVYPQTAYARATSPQRGQSPKPQ 168
           P VQQ+   QT+ A+   PQR + P PQ
Sbjct: 375 PQVQQQ--QQTSSAQQQQPQRVEQPAPQ 400


>SPBC211.08c |||ribonuclease PH-like|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 257

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 18/49 (36%), Positives = 24/49 (48%)
 Frame = +1

Query: 52  PFSKGFRQGPQPFVQQKVYPQTAYARATSPQRGQSPKPQPHVDEHYVKV 198
           PFS   RQG    V++K Y Q   A A SP       P+  +D  Y++V
Sbjct: 90  PFSTSVRQGHVQTVEEKSYSQMIEA-AISPSILLHLYPKSSIDV-YIQV 136


>SPBC1306.01c ||SPBC409.22c|translation elongation factor
           G|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 770

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
 Frame = +1

Query: 349 ETTPPKPQPPSANDP-ITLILSIQTDVLNLMTEVENFKGTKKDTQYLYNG*NAYKK 513
           ++  P    PS+  P + L   ++      +T +  ++GT K   Y+YN  N+ KK
Sbjct: 364 DSEKPVSLVPSSEKPLVALAFKLEEGRFGQLTYLRIYQGTLKRGNYIYNV-NSTKK 418


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,580,117
Number of Sequences: 5004
Number of extensions: 24125
Number of successful extensions: 85
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 214353836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)