Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_G02
(524 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0683 - 19860777-19861070,19861677-19861874,19862498-198626... 30 1.3
05_06_0057 + 25253497-25253589,25253722-25253799,25254583-252546... 30 1.3
05_03_0039 - 7621613-7622695 30 1.3
09_04_0037 + 13992103-13992624,13993001-13993180,13993423-139936... 29 3.0
10_06_0008 - 9533424-9533475,9533526-9535344,9535599-9536364,955... 28 4.0
06_01_0433 - 3078576-3078780,3078797-3078951,3079782-3079821,307... 28 4.0
04_03_0329 - 14454840-14454862,14483886-14485630,14485843-14486648 28 4.0
03_02_1029 - 13488535-13493037 28 4.0
06_03_0764 - 24414655-24414798,24415198-24415300,24415346-24415701 28 5.3
01_01_0052 - 391398-391691,392243-392647 28 5.3
06_03_0256 - 18841627-18841993,18842087-18842415,18842512-188427... 27 9.2
05_03_0040 - 7646525-7647775 27 9.2
04_01_0067 - 673381-673387,675388-678131 27 9.2
>10_08_0683 -
19860777-19861070,19861677-19861874,19862498-19862659,
19862763-19862911,19863089-19863236,19863317-19863385,
19863471-19863719,19863937-19864131,19864444-19864560,
19864978-19866537
Length = 1046
Score = 29.9 bits (64), Expect = 1.3
Identities = 18/53 (33%), Positives = 21/53 (39%)
Frame = +1
Query: 49 YPFSKGFRQGPQPFVQQKVYPQTAYARATSPQRGQSPKPQPHVDEHYVKVPVH 207
YP + + PQP+ P Y PQ P PQPH YV P H
Sbjct: 53 YPSAPPPQPQPQPYAHHSA-PLQPYP--PPPQHHAYPPPQPHPPSPYVYDPYH 102
>05_06_0057 +
25253497-25253589,25253722-25253799,25254583-25254621,
25254724-25255263,25255352-25255450,25255614-25255691,
25255961-25256146,25256240-25256365
Length = 412
Score = 29.9 bits (64), Expect = 1.3
Identities = 19/54 (35%), Positives = 22/54 (40%), Gaps = 4/54 (7%)
Frame = +1
Query: 79 PQPFVQQKVYP--QTAYARATSPQRGQSPKPQPHVDEHYVKVPVHHE--HSTPK 228
PQ Q K YP Q T + QS PHV Y +P H HS P+
Sbjct: 138 PQQSAQAKGYPIHQMPPTSTTQTSQHQSATLPPHVSSQYSNIPSHMPIVHSQPQ 191
>05_03_0039 - 7621613-7622695
Length = 360
Score = 29.9 bits (64), Expect = 1.3
Identities = 15/52 (28%), Positives = 22/52 (42%)
Frame = +1
Query: 79 PQPFVQQKVYPQTAYARATSPQRGQSPKPQPHVDEHYVKVPVHHEHSTPKAE 234
P+P + K YP+ P+ P+P+PH + P H PK E
Sbjct: 146 PKPEPEPKPYPKPKPEPKPGPKPEPKPEPKPHPEPKPEPKPKPVPHPEPKPE 197
>09_04_0037 +
13992103-13992624,13993001-13993180,13993423-13993691,
13994120-13995773
Length = 874
Score = 28.7 bits (61), Expect = 3.0
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +1
Query: 136 SPQRGQSPKPQPHVDEHYVKVPVHHEH 216
+PQR P P PHV + P +HE+
Sbjct: 525 NPQRRPPPPPSPHVPVFKPEEPTYHEY 551
>10_06_0008 -
9533424-9533475,9533526-9535344,9535599-9536364,
9551969-9552097
Length = 921
Score = 28.3 bits (60), Expect = 4.0
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +1
Query: 358 PPKPQPPSANDPITLILSIQTDVLN 432
PP P PP N +T IL+ Q +++N
Sbjct: 344 PPPPPPPDTNAILTQILAQQANMMN 368
>06_01_0433 -
3078576-3078780,3078797-3078951,3079782-3079821,
3079957-3080009,3080091-3080199,3080324-3080448,
3081112-3081201,3081280-3081342,3081453-3081544,
3081641-3081722,3081913-3082086,3082183-3082264,
3083100-3083224,3083312-3083389,3084047-3084402,
3085311-3085608
Length = 708
Score = 28.3 bits (60), Expect = 4.0
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = +1
Query: 79 PQPFVQQKVYPQTAYARATSPQRGQSPKPQP 171
P P V+Q V P +T P QSP P P
Sbjct: 51 PAPLVKQPVLPTFLVPTSTPPAPTQSPAPAP 81
>04_03_0329 - 14454840-14454862,14483886-14485630,14485843-14486648
Length = 857
Score = 28.3 bits (60), Expect = 4.0
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +1
Query: 358 PPKPQPPSANDPITLILSIQTDVLN 432
PP P PP N +T IL+ Q +++N
Sbjct: 309 PPPPPPPDTNAILTQILAQQANMMN 333
>03_02_1029 - 13488535-13493037
Length = 1500
Score = 28.3 bits (60), Expect = 4.0
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +1
Query: 358 PPKPQPPSANDPITLILSIQTDVLN 432
PP P PP N +T IL+ Q +++N
Sbjct: 27 PPPPPPPDTNAILTQILAQQANMMN 51
>06_03_0764 - 24414655-24414798,24415198-24415300,24415346-24415701
Length = 200
Score = 27.9 bits (59), Expect = 5.3
Identities = 16/59 (27%), Positives = 26/59 (44%)
Frame = +1
Query: 22 PPLIF*SFRYPFSKGFRQGPQPFVQQKVYPQTAYARATSPQRGQSPKPQPHVDEHYVKV 198
PPL +FR ++ ++ +Q V P AY + + + Q HV E Y+ V
Sbjct: 79 PPLYLPAFRRTSARQRKKSASSTMQITVRPDPAYESPSRTRINTRVRDQGHVKERYMHV 137
>01_01_0052 - 391398-391691,392243-392647
Length = 232
Score = 27.9 bits (59), Expect = 5.3
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +2
Query: 356 HHQSHNRHPQMTLLR 400
HHQ HN H Q +LLR
Sbjct: 202 HHQHHNHHHQQSLLR 216
>06_03_0256 -
18841627-18841993,18842087-18842415,18842512-18842749,
18844091-18844373,18844773-18844989,18845067-18845360
Length = 575
Score = 27.1 bits (57), Expect = 9.2
Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Frame = +1
Query: 4 RGVNFHPPLIF*SFRYPFSKGFRQGPQPFVQQKVYPQTAYARATSPQRG-QSP 159
RG++FHPP F S Y Q +PFV YP A + + G Q P
Sbjct: 265 RGMDFHPPGGFLS--YFQDPSILQNHRPFVPPNYYPAEQVAPCSKLRPGAQQP 315
>05_03_0040 - 7646525-7647775
Length = 416
Score = 27.1 bits (57), Expect = 9.2
Identities = 14/52 (26%), Positives = 20/52 (38%)
Frame = +1
Query: 79 PQPFVQQKVYPQTAYARATSPQRGQSPKPQPHVDEHYVKVPVHHEHSTPKAE 234
P+P + K YP+ P+ PKP+P + P PK E
Sbjct: 98 PEPKPEPKPYPEPKPEPKPEPKPEPEPKPEPKPEPKPEPKPYPEPKPEPKPE 149
>04_01_0067 - 673381-673387,675388-678131
Length = 916
Score = 27.1 bits (57), Expect = 9.2
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = +2
Query: 74 KVLNLSCNKKFIRRQLTPELLHLREVSLPNLSLML 178
+VL+LSC+ EL+HLR +SLP ML
Sbjct: 593 RVLDLSCSNFVQLPNSIGELVHLRYLSLPRTLNML 627
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,263,692
Number of Sequences: 37544
Number of extensions: 165407
Number of successful extensions: 1038
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 848
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1004
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1154538620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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