Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_G02
(524 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL110477-13|CAB54337.2| 789|Caenorhabditis elegans Hypothetical... 32 0.29
AF230279-1|AAG16654.1| 789|Caenorhabditis elegans SWI3-like pro... 32 0.29
AC006610-4|AAK85450.1| 246|Caenorhabditis elegans Hypothetical ... 30 0.88
AF068719-7|AAO21425.1| 399|Caenorhabditis elegans Uncoordinated... 29 1.5
AF068719-6|AAV58864.1| 457|Caenorhabditis elegans Uncoordinated... 29 1.5
AF068719-5|AAC17781.1| 458|Caenorhabditis elegans Uncoordinated... 29 1.5
AC006638-2|AAK85481.1| 1256|Caenorhabditis elegans Cyclase assoc... 29 2.7
AC006638-1|AAK85482.1| 495|Caenorhabditis elegans Cyclase assoc... 29 2.7
Z70756-9|CAA94797.1| 275|Caenorhabditis elegans Hypothetical pr... 28 4.7
U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog (hed... 28 4.7
Z77666-7|CAB01228.1| 1221|Caenorhabditis elegans Hypothetical pr... 27 6.2
AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical ... 27 6.2
Z96102-2|CAI79216.1| 746|Caenorhabditis elegans Hypothetical pr... 27 8.2
AL110501-1|CAB54509.1| 2129|Caenorhabditis elegans Hypothetical ... 27 8.2
AC006620-1|AAF39780.1| 754|Caenorhabditis elegans Hypothetical ... 27 8.2
>AL110477-13|CAB54337.2| 789|Caenorhabditis elegans Hypothetical
protein Y113G7B.23 protein.
Length = 789
Score = 31.9 bits (69), Expect = 0.29
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
Frame = +1
Query: 40 SFRYPFSKGFRQGPQPFVQQKVYPQTAYARATS----PQRGQSPKPQPHVDEHY 189
++RYP +G + P P QQ+ Q A++ + P GQ P P P ++Y
Sbjct: 637 AYRYPPQQGQQYSPYPPPQQQQQHQAQQAQSQAHYGPPGGGQGPPPPPQGQQYY 690
>AF230279-1|AAG16654.1| 789|Caenorhabditis elegans SWI3-like
protein protein.
Length = 789
Score = 31.9 bits (69), Expect = 0.29
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
Frame = +1
Query: 40 SFRYPFSKGFRQGPQPFVQQKVYPQTAYARATS----PQRGQSPKPQPHVDEHY 189
++RYP +G + P P QQ+ Q A++ + P GQ P P P ++Y
Sbjct: 637 AYRYPPQQGQQYSPYPPPQQQQQHQAQQAQSQAHYGPPGGGQGPPPPPQGQQYY 690
>AC006610-4|AAK85450.1| 246|Caenorhabditis elegans Hypothetical
protein C30F12.4 protein.
Length = 246
Score = 30.3 bits (65), Expect = 0.88
Identities = 15/49 (30%), Positives = 21/49 (42%)
Frame = +1
Query: 46 RYPFSKGFRQGPQPFVQQKVYPQTAYARATSPQRGQSPKPQPHVDEHYV 192
R S+ +Q P P+ +VYP A PQ P P V + Y+
Sbjct: 45 RPEISQYSQQQPPPYYSSQVYPSVPSAPPIQPQPQMVPVSMPMVQQQYM 93
>AF068719-7|AAO21425.1| 399|Caenorhabditis elegans Uncoordinated
protein 23, isoform b protein.
Length = 399
Score = 29.5 bits (63), Expect = 1.5
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +1
Query: 70 RQGPQPFVQQKVYPQTAYARATSPQRGQSPKPQPHVDEHYVKVPVHHE 213
+Q PQ Q++ P + A + P R + PK +P V E +P+ +E
Sbjct: 106 QQQPQQAQQRQTTPPSTKASSRPPSRTREPK-EPEVPERPAVIPLPYE 152
>AF068719-6|AAV58864.1| 457|Caenorhabditis elegans Uncoordinated
protein 23, isoform c protein.
Length = 457
Score = 29.5 bits (63), Expect = 1.5
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +1
Query: 70 RQGPQPFVQQKVYPQTAYARATSPQRGQSPKPQPHVDEHYVKVPVHHE 213
+Q PQ Q++ P + A + P R + PK +P V E +P+ +E
Sbjct: 164 QQQPQQAQQRQTTPPSTKASSRPPSRTREPK-EPEVPERPAVIPLPYE 210
>AF068719-5|AAC17781.1| 458|Caenorhabditis elegans Uncoordinated
protein 23, isoform a protein.
Length = 458
Score = 29.5 bits (63), Expect = 1.5
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +1
Query: 70 RQGPQPFVQQKVYPQTAYARATSPQRGQSPKPQPHVDEHYVKVPVHHE 213
+Q PQ Q++ P + A + P R + PK +P V E +P+ +E
Sbjct: 165 QQQPQQAQQRQTTPPSTKASSRPPSRTREPK-EPEVPERPAVIPLPYE 211
>AC006638-2|AAK85481.1| 1256|Caenorhabditis elegans Cyclase
associated protein homologprotein 1, isoform a protein.
Length = 1256
Score = 28.7 bits (61), Expect = 2.7
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +1
Query: 418 TDVLNLMTEVENFKGTKKDTQY 483
T V+NL+ E+ NFK TK+ T +
Sbjct: 879 TPVINLLGEINNFKDTKRKTPH 900
>AC006638-1|AAK85482.1| 495|Caenorhabditis elegans Cyclase
associated protein homologprotein 1, isoform b protein.
Length = 495
Score = 28.7 bits (61), Expect = 2.7
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +1
Query: 418 TDVLNLMTEVENFKGTKKDTQY 483
T V+NL+ E+ NFK TK+ T +
Sbjct: 118 TPVINLLGEINNFKDTKRKTPH 139
>Z70756-9|CAA94797.1| 275|Caenorhabditis elegans Hypothetical
protein T06E4.11 protein.
Length = 275
Score = 27.9 bits (59), Expect = 4.7
Identities = 16/41 (39%), Positives = 20/41 (48%)
Frame = +1
Query: 49 YPFSKGFRQGPQPFVQQKVYPQTAYARATSPQRGQSPKPQP 171
YP S+ Q PQ + QQ T YA+ P + Q P P P
Sbjct: 53 YPQSQQAPQAPQGYPQQPPQDPTQYAQ---PPQQQQPYPYP 90
>U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog
(hedgehog-like family)protein 7 protein.
Length = 401
Score = 27.9 bits (59), Expect = 4.7
Identities = 17/60 (28%), Positives = 22/60 (36%), Gaps = 2/60 (3%)
Frame = +1
Query: 52 PFSKGFRQGPQPFVQQKVYPQTAYARATSPQRGQSPKPQPH--VDEHYVKVPVHHEHSTP 225
P+ + P P+ QQ P P P P PH +H P + EHS P
Sbjct: 116 PYPQHAVPAPAPYQQQPPPPPPPPHYPPPPPHYPPPPPAPHSAYIDHSAPRPAYIEHSAP 175
>Z77666-7|CAB01228.1| 1221|Caenorhabditis elegans Hypothetical
protein K08E7.5a protein.
Length = 1221
Score = 27.5 bits (58), Expect = 6.2
Identities = 16/52 (30%), Positives = 21/52 (40%)
Frame = +1
Query: 79 PQPFVQQKVYPQTAYARATSPQRGQSPKPQPHVDEHYVKVPVHHEHSTPKAE 234
P P Q + Q + +P +G S K D+H P E S P AE
Sbjct: 193 PHPSAPQNLLTQLIQKKKDAPNKGSSEKSSKWSDDHASGYP---EGSAPSAE 241
>AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical
protein Y40C5A.3 protein.
Length = 2344
Score = 27.5 bits (58), Expect = 6.2
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = +1
Query: 79 PQPFVQQKVYPQTAYARATSPQRGQSPKPQPHVDEHYVKVP 201
PQP V Q+ + PQ P+PQP + Y++ P
Sbjct: 2021 PQPVVVQRPQFRPQPQPRPQPQPQPQPQPQPQPQQPYIQRP 2061
>Z96102-2|CAI79216.1| 746|Caenorhabditis elegans Hypothetical
protein H39E23.3 protein.
Length = 746
Score = 27.1 bits (57), Expect = 8.2
Identities = 14/56 (25%), Positives = 25/56 (44%)
Frame = +1
Query: 70 RQGPQPFVQQKVYPQTAYARATSPQRGQSPKPQPHVDEHYVKVPVHHEHSTPKAEA 237
++ P K ++A + +P + +S KP+ + K PV E PK E+
Sbjct: 203 KKAPAKREADKPKTESADSEKKAPAKRESDKPKTESADSEKKAPVKREADKPKTES 258
>AL110501-1|CAB54509.1| 2129|Caenorhabditis elegans Hypothetical
protein Y79H2A.3a protein.
Length = 2129
Score = 27.1 bits (57), Expect = 8.2
Identities = 15/49 (30%), Positives = 19/49 (38%)
Frame = +1
Query: 52 PFSKGFRQGPQPFVQQKVYPQTAYARATSPQRGQSPKPQPHVDEHYVKV 198
P QP Q + PQ +A P S KPQ D+H V +
Sbjct: 1817 PLQSSSFSSQQPQQQPQQQPQQQHAFYQDPPTSLSSKPQGTTDKHPVTI 1865
>AC006620-1|AAF39780.1| 754|Caenorhabditis elegans Hypothetical
protein C51G7.3 protein.
Length = 754
Score = 27.1 bits (57), Expect = 8.2
Identities = 15/49 (30%), Positives = 19/49 (38%)
Frame = +1
Query: 52 PFSKGFRQGPQPFVQQKVYPQTAYARATSPQRGQSPKPQPHVDEHYVKV 198
P QP Q + PQ +A P S KPQ D+H V +
Sbjct: 442 PLQSSSFSSQQPQQQPQQQPQQQHAFYQDPPTSLSSKPQGTTDKHPVTI 490
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,749,417
Number of Sequences: 27780
Number of extensions: 142879
Number of successful extensions: 816
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 645
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 795
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1028310386
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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