Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_G02
         (524 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    25   0.47 
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    25   0.63 
AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin prot...    23   2.5  
AB073997-1|BAC76401.1|  124|Apis mellifera preprotachykinin prot...    23   2.5  
AB073996-1|BAC76400.1|  215|Apis mellifera preprotachykinin prot...    23   2.5  
AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin prot...    23   2.5  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   4.4  
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    21   7.7  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    21   7.7  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    21   7.7  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    21   7.7  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    21   7.7  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    21   7.7  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    21   7.7  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    21   7.7  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   7.7  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 25.0 bits (52), Expect = 0.47
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +1

Query: 169 PHVDEHYVKVPVHHEHSTPKAEA 237
           PH    +   P HH+HSTP A +
Sbjct: 430 PHHHHSHAATP-HHQHSTPLAHS 451


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 24.6 bits (51), Expect = 0.63
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +2

Query: 347 ARQHHQSHNRHPQM 388
           ++ HHQ H +HP M
Sbjct: 166 SQMHHQMHTQHPHM 179


>AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin
           protein.
          Length = 339

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 10/38 (26%), Positives = 19/38 (50%)
 Frame = +1

Query: 91  VQQKVYPQTAYARATSPQRGQSPKPQPHVDEHYVKVPV 204
           V+ +++P+    RA    +G   K     DE+Y + P+
Sbjct: 75  VKNELFPEDINKRAPMGFQGMRGKKASFDDEYYKRAPM 112


>AB073997-1|BAC76401.1|  124|Apis mellifera preprotachykinin
           protein.
          Length = 124

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 10/38 (26%), Positives = 19/38 (50%)
 Frame = +1

Query: 91  VQQKVYPQTAYARATSPQRGQSPKPQPHVDEHYVKVPV 204
           V+ +++P+    RA    +G   K     DE+Y + P+
Sbjct: 76  VKNELFPEDINKRAPMGFQGMRGKKASFDDEYYKRAPM 113


>AB073996-1|BAC76400.1|  215|Apis mellifera preprotachykinin
           protein.
          Length = 215

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 10/38 (26%), Positives = 19/38 (50%)
 Frame = +1

Query: 91  VQQKVYPQTAYARATSPQRGQSPKPQPHVDEHYVKVPV 204
           V+ +++P+    RA    +G   K     DE+Y + P+
Sbjct: 75  VKNELFPEDINKRAPMGFQGMRGKKASFDDEYYKRAPM 112


>AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin
           protein.
          Length = 301

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 10/38 (26%), Positives = 19/38 (50%)
 Frame = +1

Query: 91  VQQKVYPQTAYARATSPQRGQSPKPQPHVDEHYVKVPV 204
           V+ +++P+    RA    +G   K     DE+Y + P+
Sbjct: 75  VKNELFPEDINKRAPMGFQGMRGKKASFDDEYYKRAPM 112


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +1

Query: 355 TPPKPQPP 378
           TPPKP PP
Sbjct: 337 TPPKPAPP 344


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = +3

Query: 480 IFVQWMKCLQEIS 518
           +F+QW+ CL  +S
Sbjct: 298 LFLQWLPCLLRMS 310


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = +3

Query: 480 IFVQWMKCLQEIS 518
           +F+QW+ CL  +S
Sbjct: 298 LFLQWLPCLLRMS 310


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = +3

Query: 480 IFVQWMKCLQEIS 518
           +F+QW+ CL  +S
Sbjct: 298 LFLQWLPCLLRMS 310


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = +3

Query: 480 IFVQWMKCLQEIS 518
           +F+QW+ CL  +S
Sbjct: 298 LFLQWLPCLLRMS 310


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = +3

Query: 480 IFVQWMKCLQEIS 518
           +F+QW+ CL  +S
Sbjct: 298 LFLQWLPCLLRMS 310


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = +3

Query: 480 IFVQWMKCLQEIS 518
           +F+QW+ CL  +S
Sbjct: 298 LFLQWLPCLLRMS 310


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = +3

Query: 480 IFVQWMKCLQEIS 518
           +F+QW+ CL  +S
Sbjct: 366 LFLQWLPCLLRMS 378


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = +3

Query: 480 IFVQWMKCLQEIS 518
           +F+QW+ CL  +S
Sbjct: 366 LFLQWLPCLLRMS 378


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = -3

Query: 483 ILCIFFGAFEVLDFCH*IKNICLNAKDQ 400
           I+C  + +F+VL     I N+C+ + D+
Sbjct: 112 IMCDLWVSFDVLSCTASILNLCMISVDR 139


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 105,633
Number of Sequences: 438
Number of extensions: 1721
Number of successful extensions: 17
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14722920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)