Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_G01
         (461 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1921.01c |rpl3701|rpl37-1, rpl37|60S ribosomal protein L37|S...    84   1e-17
SPCP31B10.08c |rpl35a|rpl33|60S ribosomal protein L35a|Schizosac...    83   2e-17
SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit S...    24   9.8  

>SPBC1921.01c |rpl3701|rpl37-1, rpl37|60S ribosomal protein
           L37|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 108

 Score = 83.8 bits (198), Expect = 1e-17
 Identities = 45/96 (46%), Positives = 58/96 (60%), Gaps = 1/96 (1%)
 Frame = +1

Query: 175 PRHG-RLYAKAVFTGYKRGLRNQHENTALLKIEGTKDRSDALFYAGKRCVYVYRAKKRTP 351
           P  G RLY KA    ++R     H  T+L+KIEG   + +A FY GKR  +VY++ K  P
Sbjct: 2   PAQGHRLYVKAKHLSFQRSKHVIHPGTSLVKIEGCDSKEEAQFYLGKRICFVYKSNK--P 59

Query: 352 IPGGPRGKKTKLRAIWGKVTRPHGNSGGVRARFKSN 459
           + G      +K+R IWG V+RPHGNSG VRARF  N
Sbjct: 60  VRG------SKIRVIWGTVSRPHGNSGVVRARFTHN 89


>SPCP31B10.08c |rpl35a|rpl33|60S ribosomal protein
           L35a|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 108

 Score = 83.0 bits (196), Expect = 2e-17
 Identities = 44/96 (45%), Positives = 56/96 (58%), Gaps = 1/96 (1%)
 Frame = +1

Query: 175 PRHG-RLYAKAVFTGYKRGLRNQHENTALLKIEGTKDRSDALFYAGKRCVYVYRAKKRTP 351
           P  G RLY KA    ++R     H  T+++KIEG   + +A FY GKR  YVY++ K   
Sbjct: 2   PAQGHRLYVKAKHLSFQRSKHVIHPGTSIVKIEGCDSKEEAQFYLGKRVCYVYKSSKAV- 60

Query: 352 IPGGPRGKKTKLRAIWGKVTRPHGNSGGVRARFKSN 459
                RG  +K+R IWG + RPHGNSG VRARF  N
Sbjct: 61  -----RG--SKIRVIWGTIARPHGNSGAVRARFVHN 89


>SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit Sfc9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 673

 Score = 24.2 bits (50), Expect = 9.8
 Identities = 8/13 (61%), Positives = 13/13 (100%)
 Frame = -1

Query: 281 SFVPSIFNKAVFS 243
           +F+PS+F+K+VFS
Sbjct: 412 NFIPSLFSKSVFS 424


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,777,244
Number of Sequences: 5004
Number of extensions: 32373
Number of successful extensions: 66
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 174340060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)