Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_G01
         (461 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0995 + 33377933-33378000,33378099-33378327,33378410-33378451    101   4e-22
05_07_0069 + 27475072-27475136,27475237-27475465,27475532-274756...    99   2e-21
05_07_0061 + 27420442-27420506,27420619-27420847,27420968-27421009     99   2e-21
12_01_0899 - 8689125-8689383,8689540-8689826                           29   1.8  
09_04_0201 + 15543318-15543488,15543956-15544069                       27   7.3  
03_05_1062 - 30043596-30043811,30044083-30044178,30044387-300444...    27   9.7  

>02_05_0995 + 33377933-33378000,33378099-33378327,33378410-33378451
          Length = 112

 Score =  101 bits (241), Expect = 4e-22
 Identities = 49/91 (53%), Positives = 61/91 (67%)
 Frame = +1

Query: 187 RLYAKAVFTGYKRGLRNQHENTALLKIEGTKDRSDALFYAGKRCVYVYRAKKRTPIPGGP 366
           RLY +    GYKR   NQ+ENT+L++IEG   + +  +Y GKR  YVY+AK ++   GG 
Sbjct: 11  RLYVRGTILGYKRSKSNQYENTSLVQIEGVNTKEEVAWYCGKRMAYVYKAKTKS---GG- 66

Query: 367 RGKKTKLRAIWGKVTRPHGNSGGVRARFKSN 459
               T  R IWGKVTRPHGNSG VRA+FKSN
Sbjct: 67  ----TNYRCIWGKVTRPHGNSGVVRAKFKSN 93


>05_07_0069 +
           27475072-27475136,27475237-27475465,27475532-27475630,
           27476172-27476287,27476670-27476757
          Length = 198

 Score = 99.1 bits (236), Expect = 2e-21
 Identities = 47/91 (51%), Positives = 61/91 (67%)
 Frame = +1

Query: 187 RLYAKAVFTGYKRGLRNQHENTALLKIEGTKDRSDALFYAGKRCVYVYRAKKRTPIPGGP 366
           RLY +    GYKR   NQ+ENT+LL+IEG   + +  +YAGKR  YVY+AK ++      
Sbjct: 10  RLYVRGTILGYKRSKSNQYENTSLLQIEGVNTKEEVGWYAGKRIAYVYKAKTKS------ 63

Query: 367 RGKKTKLRAIWGKVTRPHGNSGGVRARFKSN 459
               + +R IWGKVTRPHGNSG VRA+F+SN
Sbjct: 64  --NDSTIRCIWGKVTRPHGNSGVVRAKFRSN 92


>05_07_0061 + 27420442-27420506,27420619-27420847,27420968-27421009
          Length = 111

 Score = 99.1 bits (236), Expect = 2e-21
 Identities = 47/91 (51%), Positives = 61/91 (67%)
 Frame = +1

Query: 187 RLYAKAVFTGYKRGLRNQHENTALLKIEGTKDRSDALFYAGKRCVYVYRAKKRTPIPGGP 366
           RLY +    GYKR   NQ+ENT+LL+IEG   + +  +YAGKR  YVY+AK ++      
Sbjct: 10  RLYVRGTILGYKRSKSNQYENTSLLQIEGVNTKEEVGWYAGKRIAYVYKAKTKS------ 63

Query: 367 RGKKTKLRAIWGKVTRPHGNSGGVRARFKSN 459
               + +R IWGKVTRPHGNSG VRA+F+SN
Sbjct: 64  --NDSTIRCIWGKVTRPHGNSGVVRAKFRSN 92


>12_01_0899 - 8689125-8689383,8689540-8689826
          Length = 181

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = -1

Query: 446 LARTP-PELPCGRVTLPQIARSLVFLPRGPP 357
           +AR P PE PC R+ LP+    +  LP  PP
Sbjct: 30  VARLPLPEPPCARLLLPEPPWGMAALPPEPP 60


>09_04_0201 + 15543318-15543488,15543956-15544069
          Length = 94

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -1

Query: 416 GRVTLPQIARSLVFLPRGPPGIGVL 342
           GR+  PQ + S V  PRG PG+ VL
Sbjct: 6   GRLPRPQGSSSAVPRPRGLPGVSVL 30


>03_05_1062 -
           30043596-30043811,30044083-30044178,30044387-30044448,
           30044990-30045023,30045220-30046173
          Length = 453

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -2

Query: 307 QHRKVHHCDPLYLQSLTKLYFHVGCA 230
           Q R+VH CDP+Y   L    F  G A
Sbjct: 129 QLRRVHACDPIYPADLPDRRFAYGLA 154


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,055,370
Number of Sequences: 37544
Number of extensions: 268212
Number of successful extensions: 719
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 706
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 716
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 919380308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)