Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_G01
         (461 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC061890-1|AAH61890.1|  110|Homo sapiens ribosomal protein L35a ...   129   4e-30
BC017093-1|AAH17093.1|  110|Homo sapiens RPL35A protein protein.      129   4e-30
BC010949-1|AAH10949.1|  110|Homo sapiens ribosomal protein L35a ...   129   4e-30
BC001037-1|AAH01037.1|  110|Homo sapiens ribosomal protein L35a ...   129   4e-30
AY871273-1|AAX11429.1|  110|Homo sapiens cell growth-inhibiting ...   129   4e-30
X52966-1|CAA37138.1|  110|Homo sapiens protein ( Human mRNA for ...   126   3e-29
AL365223-3|CAI15713.1|   96|Homo sapiens ribosomal protein L35a ...   109   6e-24
X94619-1|CAA64325.1|   21|Homo sapiens ribosomal protein L35a pr...    38   0.013
AF209878-1|AAF40147.1|   98|Homo sapiens immunoglobulin heavy ch...    31   1.9  
X74370-1|CAA52408.1|  543|Homo sapiens mucin protein.                  29   7.8  

>BC061890-1|AAH61890.1|  110|Homo sapiens ribosomal protein L35a
           protein.
          Length = 110

 Score =  129 bits (312), Expect = 4e-30
 Identities = 61/92 (66%), Positives = 69/92 (75%)
 Frame = +1

Query: 184 GRLYAKAVFTGYKRGLRNQHENTALLKIEGTKDRSDALFYAGKRCVYVYRAKKRTPIPGG 363
           GRL++KA+F GYKRGLRNQ E+TALLKIEG   R +  FY GKRC YVY+AK  T  PG 
Sbjct: 3   GRLWSKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPG- 61

Query: 364 PRGKKTKLRAIWGKVTRPHGNSGGVRARFKSN 459
             GK  K R IWGKVTR HGNSG VRA+F+SN
Sbjct: 62  --GKPNKTRVIWGKVTRAHGNSGMVRAKFRSN 91


>BC017093-1|AAH17093.1|  110|Homo sapiens RPL35A protein protein.
          Length = 110

 Score =  129 bits (312), Expect = 4e-30
 Identities = 61/92 (66%), Positives = 69/92 (75%)
 Frame = +1

Query: 184 GRLYAKAVFTGYKRGLRNQHENTALLKIEGTKDRSDALFYAGKRCVYVYRAKKRTPIPGG 363
           GRL++KA+F GYKRGLRNQ E+TALLKIEG   R +  FY GKRC YVY+AK  T  PG 
Sbjct: 3   GRLWSKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPG- 61

Query: 364 PRGKKTKLRAIWGKVTRPHGNSGGVRARFKSN 459
             GK  K R IWGKVTR HGNSG VRA+F+SN
Sbjct: 62  --GKPNKTRVIWGKVTRAHGNSGMVRAKFRSN 91


>BC010949-1|AAH10949.1|  110|Homo sapiens ribosomal protein L35a
           protein.
          Length = 110

 Score =  129 bits (312), Expect = 4e-30
 Identities = 61/92 (66%), Positives = 69/92 (75%)
 Frame = +1

Query: 184 GRLYAKAVFTGYKRGLRNQHENTALLKIEGTKDRSDALFYAGKRCVYVYRAKKRTPIPGG 363
           GRL++KA+F GYKRGLRNQ E+TALLKIEG   R +  FY GKRC YVY+AK  T  PG 
Sbjct: 3   GRLWSKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPG- 61

Query: 364 PRGKKTKLRAIWGKVTRPHGNSGGVRARFKSN 459
             GK  K R IWGKVTR HGNSG VRA+F+SN
Sbjct: 62  --GKPNKTRVIWGKVTRAHGNSGMVRAKFRSN 91


>BC001037-1|AAH01037.1|  110|Homo sapiens ribosomal protein L35a
           protein.
          Length = 110

 Score =  129 bits (312), Expect = 4e-30
 Identities = 61/92 (66%), Positives = 69/92 (75%)
 Frame = +1

Query: 184 GRLYAKAVFTGYKRGLRNQHENTALLKIEGTKDRSDALFYAGKRCVYVYRAKKRTPIPGG 363
           GRL++KA+F GYKRGLRNQ E+TALLKIEG   R +  FY GKRC YVY+AK  T  PG 
Sbjct: 3   GRLWSKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPG- 61

Query: 364 PRGKKTKLRAIWGKVTRPHGNSGGVRARFKSN 459
             GK  K R IWGKVTR HGNSG VRA+F+SN
Sbjct: 62  --GKPNKTRVIWGKVTRAHGNSGMVRAKFRSN 91


>AY871273-1|AAX11429.1|  110|Homo sapiens cell growth-inhibiting
           protein 33 protein.
          Length = 110

 Score =  129 bits (312), Expect = 4e-30
 Identities = 61/92 (66%), Positives = 69/92 (75%)
 Frame = +1

Query: 184 GRLYAKAVFTGYKRGLRNQHENTALLKIEGTKDRSDALFYAGKRCVYVYRAKKRTPIPGG 363
           GRL++KA+F GYKRGLRNQ E+TALLKIEG   R +  FY GKRC YVY+AK  T  PG 
Sbjct: 3   GRLWSKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPG- 61

Query: 364 PRGKKTKLRAIWGKVTRPHGNSGGVRARFKSN 459
             GK  K R IWGKVTR HGNSG VRA+F+SN
Sbjct: 62  --GKPNKTRVIWGKVTRAHGNSGMVRAKFRSN 91


>X52966-1|CAA37138.1|  110|Homo sapiens protein ( Human mRNA for
           ribosomal protein L35a. ).
          Length = 110

 Score =  126 bits (305), Expect = 3e-29
 Identities = 60/92 (65%), Positives = 68/92 (73%)
 Frame = +1

Query: 184 GRLYAKAVFTGYKRGLRNQHENTALLKIEGTKDRSDALFYAGKRCVYVYRAKKRTPIPGG 363
           GRL++KA+F GYKRGLRNQ E+TALLKIEG   R +  FY GKRC YVY+AK  T  PG 
Sbjct: 3   GRLWSKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPG- 61

Query: 364 PRGKKTKLRAIWGKVTRPHGNSGGVRARFKSN 459
             GK  K R IWGKVTR HGNSG V A+F+SN
Sbjct: 62  --GKPNKTRVIWGKVTRAHGNSGMVLAKFRSN 91


>AL365223-3|CAI15713.1|   96|Homo sapiens ribosomal protein L35a
           pseudogene 3 protein.
          Length = 96

 Score =  109 bits (261), Expect = 6e-24
 Identities = 54/92 (58%), Positives = 63/92 (68%)
 Frame = +1

Query: 184 GRLYAKAVFTGYKRGLRNQHENTALLKIEGTKDRSDALFYAGKRCVYVYRAKKRTPIPGG 363
           GRL++K+ F GYKR L+NQ E+TALLKIEG   + +  FY GKRC  VY+AK  T IPG 
Sbjct: 2   GRLWSKSFFAGYKRSLQNQREHTALLKIEGGYAQDETEFYLGKRCACVYKAKSNTMIPG- 60

Query: 364 PRGKKTKLRAIWGKVTRPHGNSGGVRARFKSN 459
              K  K R IWGKVTR H NSG V A+F SN
Sbjct: 61  --SKPNKSRVIWGKVTRAHRNSGMVAAKFHSN 90


>X94619-1|CAA64325.1|   21|Homo sapiens ribosomal protein L35a
           protein.
          Length = 21

 Score = 38.3 bits (85), Expect = 0.013
 Identities = 15/19 (78%), Positives = 18/19 (94%)
 Frame = +1

Query: 184 GRLYAKAVFTGYKRGLRNQ 240
           GRL++KA+F GYKRGLRNQ
Sbjct: 3   GRLWSKAIFAGYKRGLRNQ 21


>AF209878-1|AAF40147.1|   98|Homo sapiens immunoglobulin heavy chain
           variable region 194-118 protein.
          Length = 98

 Score = 31.1 bits (67), Expect = 1.9
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = -3

Query: 459 VRLEPGTDTTGVAMRAGHLAPDCTKLSFLATWTPGDRRPF 340
           V +   T T+   M    L P+ T + F AT TPGD  PF
Sbjct: 49  VTMTTDTSTSTAYMELRSLTPEDTSVYFCATRTPGDGWPF 88


>X74370-1|CAA52408.1|  543|Homo sapiens mucin protein.
          Length = 543

 Score = 29.1 bits (62), Expect = 7.8
 Identities = 16/44 (36%), Positives = 19/44 (43%)
 Frame = -2

Query: 406 PCPRLHEA*FSCHVDPRGSASFSLHGRHTRNACQHRKVHHCDPL 275
           P PRLH        D   ++S   H  HT N   H +  H DPL
Sbjct: 376 PQPRLHSHPLLQPRDGTHASSVDQHNHHTHNHHTHNQWLHGDPL 419


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 69,373,937
Number of Sequences: 237096
Number of extensions: 1530065
Number of successful extensions: 4439
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4333
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4432
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 3929066862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)